Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., nickel transporter permease NikB (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  177 bits (448), Expect = 4e-49
 Identities = 103/292 (35%), Positives = 163/292 (55%), Gaps = 2/292 (0%)

Query: 19  VGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAELGLDRSAFELYLQWLWDLL 78
           V  + F+L+R   GD A  +A  R        +A    R  L LD   +E Y +WL   +
Sbjct: 19  VSVVVFLLLRAAQGDPA--MAYLRLSRIPPTDEALATARRMLELDLPLWEQYARWLARAV 76

Query: 79  HLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPIGVYCGKRTDRWADNLAL 138
             + G+S V+  PV+  ++H L  +L LAGAA LL+L ++IP+GV      DR  DN A 
Sbjct: 77  TGDFGNSYVTGRPVLGEVLHYLPATLQLAGAALLLTLIVSIPLGVGAALHRDRPLDNAAR 136

Query: 139 LTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPKFLILPALALALGMAAMSSRMIR 198
             S    + P F +G  LV LFA++L WLP  G G  + L+LPA+ L+L    +++R+IR
Sbjct: 137 ALSFTSVSLPNFWLGFLLVWLFAVKLGWLPALGRGGLEHLVLPAVTLSLMSMGINTRLIR 196

Query: 199 NATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVMAFVGIQAVSLVEGIVMIESLF 258
            +  + + + +  +AR +G++      RH  +N  +PV+  +G+    L+ G V++E++F
Sbjct: 197 ASLLENMHARHIMYARARGISERGVVWRHMFKNSLIPVLTSLGMHVGELLGGAVIVETVF 256

Query: 259 SWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLVDLVQYALDPRLRL 310
           +WPGVG     A++ RD P++Q   L+M  +FV  N  VD++    DPR+RL
Sbjct: 257 AWPGVGRYAVSAVYNRDYPILQCFMLLMTAIFVLCNLAVDILYAWADPRIRL 308