Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  185 bits (470), Expect = 1e-51
 Identities = 111/327 (33%), Positives = 177/327 (54%), Gaps = 26/327 (7%)

Query: 1   MTKILVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAEL 60
           M   L+ R    + +   V  + F L+   PGD    I         +  DA++ ++ +L
Sbjct: 1   MLTFLIRRVAYTIPIMLGVSLVCFALVHISPGDPLVSI---------LPPDASVELQQQL 51

Query: 61  ----GLDRSAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLF 116
               G DRS  E +++WL   +  +LG+S+ +  PV   +++ +G++L+LA  AT++   
Sbjct: 52  MAIYGFDRSYPEQFIRWLGRAVQGDLGNSIATGRPVTAEVLNAVGNTLILAVTATIIGFT 111

Query: 117 IAIPIGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFG--- 173
                G   G   D W D LA   S++  + P + +G+ LVI+F++QL WLP  G G   
Sbjct: 112 FGGLFGFVAGYFRDSWIDKLASTISVVGVSIPHYWLGMVLVIIFSVQLGWLPATGAGPRG 171

Query: 174 ---------HPKFLILPALALALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAF 224
                    H ++LILPA+ +++    + +R +R   A +LQ  Y    R KGL  ++  
Sbjct: 172 SSEWAFDWEHLQYLILPAVTMSVIPMGIVARTVRALVADILQQEYVTGLRAKGLL-DRGV 230

Query: 225 TRHAQRNIALPVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSAL 284
             H  +N A   +A +G+Q   L+ G ++IE++FSWPG G  L  AIFQRD+P++QG+ L
Sbjct: 231 LAHVIKNAAPTALAVMGLQLGYLLGGSILIETVFSWPGTGFLLGQAIFQRDLPLLQGTIL 290

Query: 285 VMGLLFVALNTLVDLVQYALDPRLRLS 311
           V+ + FV LN LVD+ Q ALDPRL+ S
Sbjct: 291 VLAMFFVILNLLVDVAQSALDPRLQRS 317