Pairwise Alignments

Query, 521 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 529 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score = 93.2 bits (230), Expect = 2e-23
 Identities = 106/472 (22%), Positives = 188/472 (39%), Gaps = 67/472 (14%)

Query: 81  PLLAKSWTVSDDGLVWRFQIRPEVQFHDGSQLTAQAAATALN---------------HAL 125
           P LA+ W VS DGL + F++RP+V+FH     T +   TA +               H +
Sbjct: 69  PSLAERWEVSTDGLTYVFKLRPQVKFHHTDYFTPRRDLTAEDVKFSFERMLDPANPWHKV 128

Query: 126 GKPGV----IKQVP--IKAITAQNDQVVIELNTVYRPLAAVLAHYSLAIASPSSYDASGN 179
            + G       Q+P  IK + A  D + +   T+    +  LA  S+  AS  S + +  
Sbjct: 129 AQSGFPHAQSMQLPALIKKVDAL-DPLTVRF-TLDHADSTFLATLSMGFASIYSAEYADQ 186

Query: 180 VIRL----------LGTGPYQIAQLQAPHKASVIRFNAYWGKPASIETINYLAGHRSESR 229
           +++           +GTGP+  ++ Q          +AY+G    ++ + +     +  R
Sbjct: 187 LMKAGTPEKLNSLPIGTGPFIFSRFQKDASIRYKANDAYFGGKPQVDPLVFAITPDANVR 246

Query: 230 ALLAQTGQADLVYTLDPISIPSLQQSHNLDLYIESMPRTVLIKLNNEHPLLNHADVRQAI 289
               +  +  +  +  P+ + + +Q   L +       T  + +N++HP L+  +VRQAI
Sbjct: 247 LQKLRRNECQIALSPKPLDVQAAKQEPTLKVEQTDAFMTAFVAINSQHPPLDKPEVRQAI 306

Query: 290 SLAINREGIAQSVLKLPGSEAHQLFSPALGAWHLADKTQPQRH-LATAQTLLANQG---- 344
           +LA ++    ++V +     A+  + P    W  A       H LA A+ LLA  G    
Sbjct: 307 NLAFDKASYLKTVFEGTAEAANGPYPP--NTWSYAKSLPGYTHDLAKARDLLAKAGLKEG 364

Query: 345 -----WTLNDQGLLEREGQAFRVQLLTYADRPELPLIATALQAQLKEIGIQVDIAIDNSS 399
                WT     LL                 P   + A  LQ+ L +IGIQ +I +    
Sbjct: 365 FQTTIWTRPSGSLL----------------NPNPSVGAQLLQSDLAQIGIQAEIRVIEWG 408

Query: 400 AIPAKHHDGTLEMALIARNFGTIADPLPLLLSDF---ATHQGSDWGPTNWSSPQFSQLLA 456
            +  +   G  ++ L     G   DP   L   F   A   G+++    + +P   +L++
Sbjct: 409 ELIRRAKAGEHDL-LFMGWAGDNGDPDNFLTPQFSCAAVKSGTNF--ARYCNPDLDKLIS 465

Query: 457 ELSTESDNARYQQLAAQASQLLADEMPLIPVTYYRQIVSVNKRVAGFSFDPF 508
              T  +     +L  QA   +  +   +P+ +        K V G+S  PF
Sbjct: 466 AGKTTGEQGVRAKLYEQAQAQIQQQALWLPLAHPTAFALTRKDVQGYSVSPF 517