Pairwise Alignments

Query, 521 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score = 91.3 bits (225), Expect = 8e-23
 Identities = 105/464 (22%), Positives = 177/464 (38%), Gaps = 51/464 (10%)

Query: 81  PLLAKSWTVSDDGLVWRFQIRPEVQFHD------GSQLTAQAAATALNHALGKPGVIKQV 134
           P LA  W VS DGLV+ F +R  V+FH            A          L      +Q 
Sbjct: 73  PGLATRWDVSADGLVYTFHLREGVKFHTTDYFSPSRDFNADDVLFTFQRLLDPQHPFRQA 132

Query: 135 ---------------PIKAITAQNDQVV-IELNTVYRPLAAVLAHYSLAIASPSSYDASG 178
                           IK++   ++  V   LN V    AA + + +++ AS  S + + 
Sbjct: 133 YPTESPYFTDMGLNTTIKSVEKVDEHTVRFNLNNVD---AAFVQNLAMSFASVQSAEYAA 189

Query: 179 NVIRL----------LGTGPYQIAQLQAPHKASVIRFNAYWGKPASIETINYLAGHRSES 228
            +++           +GTGP+   + Q   +       AYW KP  ++  N +     ++
Sbjct: 190 QLLKEGKAGDLNQKPIGTGPFVFKRYQKDSQIRYAGNTAYW-KPEDVKLDNLIFSITPDA 248

Query: 229 RALLAQT--GQADLVYTLDPISIPSLQQSHNLDLYIESMPRTVLIKLNNEHPLLNHADVR 286
              L +   G+  +     P  I  ++Q  NL +  +       +  N  HP L+   VR
Sbjct: 249 AVRLQKLKRGECQVSGYPRPADIEVMEQDPNLQVLKQPGFNLGFLAYNVTHPPLDQLKVR 308

Query: 287 QAISLAINREGIAQSVLKLPGSEAHQLFSPALGAWHLADKTQPQRHLATAQTLLANQGWT 346
           QA+ +AI++  I ++V +  G  A     PA   W      +   H  T    L      
Sbjct: 309 QALDMAIDKPAIIKAVYQSAGQLAQNALPPA--QWSFDPNIKDAPHDVTKAKAL------ 360

Query: 347 LNDQGLLEREGQAFRVQLLTYADRPELPLIATALQAQLKEIGIQVDIAIDNSSAIPAKHH 406
           L + G+            +  A  P   + A  +Q    +IGI+ +I          +  
Sbjct: 361 LKEAGVAPGTTIDLWAMTVQRASNPNARMSAQMIQQDWAKIGIKANIVSYEWGEYIKRAK 420

Query: 407 DGTLEMALIARNFGTIADPLPLL--LSDFATHQGSDWGPTNWSSPQFSQLLAELSTESDN 464
           +G  + A+I    G   DP   L  L   A  +GS++    W  P + QL+ +    +D 
Sbjct: 421 NGEHD-AMIYGWTGDNGDPDNWLGVLYSCAAVKGSNYA--KWCDPAYDQLIQQAKVSTDR 477

Query: 465 ARYQQLAAQASQLLADEMPLIPVTYYRQIVSVNKRVAGFSFDPF 508
            +   L  QA ++L  ++P+ P+        VN++V  F   PF
Sbjct: 478 QQRIDLYRQAQKILKQQVPITPIANSTVFQPVNRKVVDFKLSPF 521