Pairwise Alignments

Query, 521 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., peptide-binding periplasmic ABC transporter protein from Sinorhizobium meliloti 1021

 Score = 98.6 bits (244), Expect = 5e-25
 Identities = 117/470 (24%), Positives = 199/470 (42%), Gaps = 63/470 (13%)

Query: 57  DGFLFSRLQ-VVESLVGINENSQPYPLLAKSW-TVSDDGLVWRFQIRPEVQFHDGSQLTA 114
           D +  S L  V E LV  + N +  P LA+SW TVSD   VWRF +R  V+FHDG++ TA
Sbjct: 42  DSYTLSFLNHVYEGLVRYDANLKIEPALAESWETVSDT--VWRFHLRKGVKFHDGAEFTA 99

Query: 115 QAAATALNHALGKPGVIK-QVPIKAITAQNDQ--VVIELNTVYRPLAAVLAHYSLAIA-- 169
                +L         ++  +P    + + D   + IEL+  Y  L   L +  +  A  
Sbjct: 100 DDVLASLKRVSDPVSPLRGNLPAYKSSKKVDDHTIDIELSGPYPLLLNDLTNIHVFDAGW 159

Query: 170 -----SPSSYDASGNV-----IRLLGTGPYQIAQLQAPHKASVIRFNAYWGKPA--SIET 217
                S    D    +         GTGP+++       K  +++   +W K +  +++ 
Sbjct: 160 LKTNNSEKPTDVGAKIEGYATYHTNGTGPFKLESRVPDSKTVLVKNPDWWDKTSKSNVDR 219

Query: 218 INYLAGHRSESRALLAQTGQADLVYTLDPISIPSLQQSHNLDLYIESMPRTVLIKLNNEH 277
           I +     + +R     +G+ +         +P LQ   +L +   +  RTV++  N + 
Sbjct: 220 IEFTPITSAATRVAALLSGEVNFTENAPSQDLPRLQAQPDLKVMERTDLRTVMVGFNRKP 279

Query: 278 PLLNHAD-------VRQAISLAINREGIAQSVLKLPGSEAHQLFSPALGAWHLADKTQPQ 330
            L N ++       VRQA + A++R+ I Q V++     A  + +P +  +     T   
Sbjct: 280 ELANGSENKFNDLRVRQAFAHALDRDLIQQRVMRGKSRTAGAVVAPEIPGYAPELDTTLA 339

Query: 331 RHLATAQTLLANQG-----WTL---NDQGLLEREGQAFRVQLLTYAD-RPELPLIATALQ 381
              A ++ LLA  G     +TL    D  + E E     V LL+ A  +P+L +  TA Q
Sbjct: 340 FDPALSKKLLAEAGASDYPFTLVCTTDAYVNEEELCQGLVNLLSRAGFKPQLDIAPTAAQ 399

Query: 382 AQLKEIGIQVDIAIDNSSAIPAKHHDGTLEMALIARNFGTIADPLPLLLSDFATHQGS-- 439
           A                     K   G  ++ LI      + D   +LL    T   +  
Sbjct: 400 AP--------------------KRTSGKSDVYLIGWATEPMLDSYSILLQMIQTKTANAG 439

Query: 440 --DWGPTNWSSPQFSQLLAELSTESDNARYQQLAAQASQLLADEMPLIPV 487
             +WG   WS P+  +L+ + STE D  +   L ++A Q++ DE+ ++P+
Sbjct: 440 VFNWG--GWSYPEIDKLIVQASTEMDRTKRLALQSKALQMVKDEIVMLPL 487