Pairwise Alignments

Query, 521 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 529 a.a., periplasmic binding protein from Sinorhizobium meliloti 1021

 Score =  104 bits (259), Expect = 9e-27
 Identities = 108/440 (24%), Positives = 178/440 (40%), Gaps = 37/440 (8%)

Query: 78  QPYPLLAKSWTVSDDGLVWRFQIRPEVQFHDGSQLTAQAAATALNH------ALGKPGVI 131
           +P P LA+SW  S D   W F IR  V+FHDG +LT       L          G  GV+
Sbjct: 98  EPVPALAESWEPSADAATWTFTIRKGVKFHDGKELTIDDVIKTLQRHTDEKSESGALGVM 157

Query: 132 KQVPIKAITAQNDQVVIELNTVYRPLAAVLAHYSLAIASPSSYDASGNVIRLLGTGPYQI 191
           K   IK I A  D++V+ L      L  +L  Y L I      D   N   ++GTGPY++
Sbjct: 158 KS--IKEIKADGDKLVLTLTEGNADLPLLLTDYHLIIQPNGGTD---NPDAMIGTGPYKV 212

Query: 192 AQLQAPHKASVIRFNAYWGKPAS-IETINYLAGHRSESRALLAQTGQADLVYTLDPISIP 250
           A  +   +A+  R    W      ++++  +A + + +R     +GQ   +  +DP ++ 
Sbjct: 213 ASFEPGVRATFERNADDWRTDRGYVDSVELIAMNDATARIAALSSGQVHFINRVDPKTVN 272

Query: 251 SLQQSHNLD-LYIESMPRTVLIKLNNEHPLLNHADVRQAISLAINREGIAQSVLKLPGSE 309
            L+++  ++ L        V I   N  P  N+ D+R A+  A++RE + Q +L   G  
Sbjct: 273 LLKKAPTVEILNTSGRGHYVFIMHCNTAPFDNN-DLRMALKYAMDRETLVQRILGGYGKV 331

Query: 310 AHQLFSPALGAWHLADKTQPQRHLATAQTLLANQGWTLNDQGLLEREGQAFRVQLLTYAD 369
            +    P    + L  +   QR     +     +    +   LL     AF         
Sbjct: 332 GNDF--PINDTYALFPEGIEQRAYDPDKAAFHYKKSGHSGPVLLRTSDVAF--------- 380

Query: 370 RPELPLIATALQAQLKEIGIQVDIAIDNSSAIPAKHHDGTLEMALIARNFGTI---ADPL 426
            P     A   QA  K+ GI++++  +          DG        + F T      P 
Sbjct: 381 -PGAVDAAVLYQASAKKAGIEIEVKREPG--------DGYWSNVWNVQPFSTSYWGGRPT 431

Query: 427 PLLLSDFATHQGSDWGPTNWSSPQFSQLLAELSTESDNARYQQLAAQASQLLADEMPLIP 486
              +   A    +DW  T +  P F ++L E  +E D A+ + +    + ++ DE  LI 
Sbjct: 432 QDQMYSTAYLSTADWNDTRFKRPDFDKILLEARSELDEAKRKDMYRTMAMMVRDEGGLIL 491

Query: 487 VTYYRQIVSVNKRVAGFSFD 506
             +   + +  K V G+  D
Sbjct: 492 PMFNDFVNAAGKTVKGYVHD 511