Pairwise Alignments

Query, 521 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 531 a.a., periplasmic dipeptide-binding protein from Sinorhizobium meliloti 1021

 Score = 85.9 bits (211), Expect = 3e-21
 Identities = 109/470 (23%), Positives = 184/470 (39%), Gaps = 65/470 (13%)

Query: 81  PLLAKSWTVSDDGLVWRFQIRPEVQFHDGSQLTAQAAATA------------LNH----- 123
           P LA+SWT+SDDGL + F++RP V+F      T      A             +H     
Sbjct: 71  PGLAESWTISDDGLEYTFKLRPGVKFQTTEFFTPTRELNADDVIFSIERQWKSDHPWHGY 130

Query: 124 ----------ALGKPGVIKQVPIKAITAQNDQVVIELNTVYRPLAAVLAHYSLAIASPSS 173
                      +G P +++ V        +  V I+L     P  A LA    +I S   
Sbjct: 131 VTGGSWEYFAGMGLPELLESVE----KVDDMTVKIKLKRKEAPFLANLAMPFASIMSKEY 186

Query: 174 YD---ASGNVIRL----LGTGPYQIAQLQAPHKASVIRFNA---YWGKPASIETINYLAG 223
            D   A G + +L    LGTGP+     Q   + +VIR+ A   +WG    I+ + +   
Sbjct: 187 ADKLQAEGKMNQLNQMPLGTGPFAFVGYQ---QDAVIRYKAHPDFWGGKQKIDDLVFAIT 243

Query: 224 HRSESRALLAQTGQADLVYTLDPISIPSLQQSHNLDLYIESMPRTVLIKLNNEHPLLNHA 283
             +  R    Q G+  L+   +   + +++   NL +  ++      +  N   P  +  
Sbjct: 244 TDAAVRFQKLQAGECHLMPYPNAADVEAMKADPNLKVMEQAGLNVAYLAYNTTQPPFDKV 303

Query: 284 DVRQAISLAINREGIAQSVLKLPGSEAHQLFSPALGAW--HLADKTQPQRHLATAQTLLA 341
           +VR+A++ AIN++ I  +V +   + A     P + ++  H+ D T        A+ +L 
Sbjct: 304 EVRKALNKAINKQAIVDAVFQGQATPATNPIPPTMWSYNEHIEDDTYDPE---AAKKMLE 360

Query: 342 NQGWTLNDQGLLEREGQAFRVQLLTYADRPELPLIATALQAQLKEIGIQVDIA----IDN 397
           + G  + D  +        R  +L      EL      +QA   ++G++V+I      + 
Sbjct: 361 DAG--VKDLSMKVWAMPVARPYMLNARRAAEL------MQADFAKVGVKVEIVSYEWAEY 412

Query: 398 SSAIPAKHHDGTLEMALIARNFGTIADPLPLLLSDFATHQGSDWGPTNWSSPQFSQLLAE 457
                AK  DG    A+I    G   DP   L +              W   +F +L+ +
Sbjct: 413 LEKSKAKDRDG----AVILGWTGDNGDPDNFLDTLLGCDAVGGNNRAQWCDKEFDELVTK 468

Query: 458 LSTESDNARYQQLAAQASQLLADEMPLIPVTYYRQIVSVNKRVAGFSFDP 507
               SD A   +L  +A  +   E P   + +   IV + K V GF   P
Sbjct: 469 AKEASDVAERTKLYEEAQVVFKREAPWATLDHSLSIVPMRKNVEGFVQSP 518