Pairwise Alignments

Query, 521 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., peptide ABC transporter, periplasmic peptide-binding protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  102 bits (255), Expect = 3e-26
 Identities = 131/537 (24%), Positives = 208/537 (38%), Gaps = 67/537 (12%)

Query: 18  FGLILALGGAGIWLT-----KTEPAPSSLEISGPFEFNSQDLAKDGFLFSRLQVVES-LV 71
           F L+  LGG   WL      +  P         P  FN Q +     + +  Q + S LV
Sbjct: 11  FALLPLLGG---WLAACGHQQLPPGVVYCSEGNPESFNPQTVTSGTTIDATSQQIYSRLV 67

Query: 72  GIN-ENSQPYPLLAKSWTVSDDGLVWRFQIRPEVQFHDGSQLTAQAAATALN-------- 122
             + E  +  P LA+ W++SDDGL +RF +R  VQFH  ++ T      A +        
Sbjct: 68  DYDAEEGKIVPALAERWSISDDGLEYRFVLRQGVQFHHSAKFTPSRPMNADDVLFSFQRI 127

Query: 123 -------HALGKPG------VIKQVPIKAITAQND-QVVIELNTVYRP------------ 156
                  H + + G      +     + ++T   D +VV +LN                 
Sbjct: 128 LDDEHPFHWVSRSGYPFFQSIDFANQVASVTKAGDNEVVFKLNHTDASFLSNLATDFAVI 187

Query: 157 LAAVLAHYSLAIASPSSYDASGNVIRLLGTGPYQIAQLQAPHKASVIRFNAYWGKPASIE 216
           L+A  A   L   +P   D     I+ +GTGP+++ +          R   YWGK   I+
Sbjct: 188 LSAEYAAQQLRAGTPEQLD-----IQAIGTGPFRLVEYVKNEYIRYRRHEDYWGKAPEID 242

Query: 217 TINYLAGHRSESRALLAQTGQADLVYTLDPISIPSLQQSHNLDLYIESMP--RTVLIKLN 274
            + Y    +S  R     TG    V  L       L ++H  +L +ES P         N
Sbjct: 243 MLVYDITSKSTVRLSKLITGDCS-VSALPKAGELDLIEAHP-ELTLESKPGLNVAFWAFN 300

Query: 275 NEHPLLNHADVRQAISLAINREGIAQSVLKLPGSEAHQLFSPALGAWHLADKTQPQRHLA 334
            +    N   VR+A+SLAI++  I  +V +    EA  L  P+  A+    +       +
Sbjct: 301 TQKAPFNDVRVRKALSLAIDKRNILAAVYQDTAVEAQSLLPPSSWAYARDYELDIDYSPS 360

Query: 335 TAQTLLANQGWTLNDQGLLEREGQAFRVQLLTYADRPELPLIATALQAQLKEIGIQVDIA 394
            A TLLA+ G        +           +  A  P     A  +QA L  IG++ +I 
Sbjct: 361 RAMTLLADAG--------IRNLSIDIWAMPVARAYNPNALKTAELIQADLANIGVKANII 412

Query: 395 IDNSSAIPAKHHDGTLEMALIARNFGTIADP---LPLLLSDFATHQGSDWGPTNWSSPQF 451
             + S    K +    +  LI  N    +DP      LLS  +   GS+   + W +P F
Sbjct: 413 SYDWSVFTQKLNQSDYDSVLIGWNADN-SDPDNFFSPLLSCASMASGSN--RSRWCNPAF 469

Query: 452 SQLLAELSTESDNARYQQLAAQASQLLADEMPLIPVTYYRQIVSVNKRVAGFSFDPF 508
            QLL++  + +D      L  +A   +A E+PL    + ++ +     +      PF
Sbjct: 470 DQLLSKARSTTDRLERTALYQEAQATVAKELPLFAFAHAKRSLVHRNNIQHMPVTPF 526