Pairwise Alignments

Query, 521 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 553 a.a., Nickel ABC transporter, periplasmic nickel-binding (NCBI) from Rhodospirillum rubrum S1H

 Score =  113 bits (282), Expect = 2e-29
 Identities = 120/509 (23%), Positives = 208/509 (40%), Gaps = 33/509 (6%)

Query: 24  LGGAGIWLTKTEP-----APSSLEISGPFEFN--SQDLAKDGFLFSRLQVVESLVGINEN 76
           +G  GI L    P     A  +L  S P      +  L     +F++  V E LV    +
Sbjct: 34  VGALGIALCALSPFGAARAGETLNFSWPQNVGPLNPHLYSPNQMFAQAMVYEPLVRYRAD 93

Query: 77  SQPYPLLAKSWTVSDDGLVWRFQIRPEVQFHDGSQLTAQAAATALNHALGKPGVIKQVPI 136
               P LA+SW +S DG V+ F +RP+V F +G    A+A     +  L      + + +
Sbjct: 94  GAVVPWLARSWEISADGRVYTFSLRPDVLFANGEAFDAKAVVANFDAVLANRARHQWLEL 153

Query: 137 KAITAQNDQVV------IELNTVYRPLAAVLA-HYSLAIASPSSYDASG----NVIRLLG 185
            A   +  +VV      + L   Y P+   LA        +PS +  +G     ++  +G
Sbjct: 154 -ANQIERVEVVDDLAFRLTLKEAYYPILQELALPRPFRFIAPSRFGKAGGTKDGIVEPVG 212

Query: 186 TGPYQIAQLQAPHKASVIRFNAYWGKPASIETINYLAGHRSESRALLAQTGQADLVYTLD 245
           TGP+++            R +AYWG+  + + I         +RA+  +TG  DL+Y +D
Sbjct: 213 TGPWKLVASGLGEYDLFERNDAYWGEKPAYDKIMVKVIPDPTTRAIAFETGDIDLIYGVD 272

Query: 246 -PISIPSLQQSHNLDLYIESMP---RTVLIKLNNEHPLLNHADVRQAISLAINREGIAQS 301
            P+   +  +   + LY  ++     T ++ LN+     N   VRQA++ AI+++ +  S
Sbjct: 273 GPVYPDTFDRLRAMGLYTAALSAPVETRVLALNSNRAPTNELAVRQALNHAIDKDTMIAS 332

Query: 302 VLKLPGSEAHQLFSPALGAWHLADKTQPQRHLATAQTLLANQGWTLN-DQGLLEREGQAF 360
           V     + A  LFS  +    +A K       A A  LL    W       L  ++G+  
Sbjct: 333 VFYGTQTRADTLFSTNVPYADIALKPYAYDR-ARAAALLEAANWRFEAGSDLRSKDGKPL 391

Query: 361 RVQLLTYADRPELPLIATALQAQLKEIGIQVDIAIDNSSAIPAKHHDGTLEMALIARNFG 420
            + L+          +A  +Q  L++IG+   +  +  S++ ++ HDG   M +    +G
Sbjct: 392 LIDLVFVGTDAVAKSMAEIVQGDLRKIGVGAVLVGEEESSVFSRQHDGRFGM-IFNSTWG 450

Query: 421 TIADPLPLLLS----DFATHQGSDWGPTNWSSPQFSQLLAELSTESDNARYQQLAAQASQ 476
              DP   + S      A +Q     P      +    ++ +   +D    Q L  +   
Sbjct: 451 APFDPHAFVSSMRVPSHADYQAQRGLP---DKAEIDATISRVLVTTDETERQALYTKILT 507

Query: 477 LLADEMPLIPVTYYRQIVSVNKRVAGFSF 505
            L D+   +P+T+   I    K V   SF
Sbjct: 508 RLHDQAVYLPLTHVTAIALAKKAVGPLSF 536