Pairwise Alignments

Query, 521 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 538 a.a., nickel ABC transporter, periplasmic nickel-binding protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  115 bits (288), Expect = 4e-30
 Identities = 119/470 (25%), Positives = 195/470 (41%), Gaps = 30/470 (6%)

Query: 60  LFSRLQVVESLVGINENSQPYPLLAKSWTVSDDGLVWRFQIRPEVQFHDGSQLTAQAAAT 119
           +F++  V E LV   +     P LA+SWTVS DG  + F +R  V F DG+   ++A   
Sbjct: 60  MFAQGMVYEPLVKYAKGGAMEPWLAESWTVSPDGKTYTFTLRKGVTFSDGTPFDSRAVRM 119

Query: 120 ALNHALGKPG------VIKQVPIKAITAQNDQVVIELNTVYRPLAAVLAHY-SLAIASPS 172
            L   L          ++ Q+  K  T     V + L   Y P    LA    +   SPS
Sbjct: 120 NLETVLANRARHDWLELVAQID-KVETPDARTVRLVLKNAYYPALQELALIRPVRFLSPS 178

Query: 173 SYDASGN----VIRLLGTGPYQIAQLQAPHKASVIRFNAYWGKPASIETINYLAGHRSES 228
           ++  SGN    +   +GTGP+++ + +        R +AYWGK  +I+ I         +
Sbjct: 179 AFPPSGNTNDGIKAPIGTGPWKLVETRKGEYDVFERNDAYWGKKPAIKRIVVKVIPDPNT 238

Query: 229 RALLAQTGQADLVY--------TLDPISIPSLQQSHNLDLYIESMPRTVLIKLNNEHPLL 280
           R +  Q G+ DLV+         +   +  +L++      Y+     + +I LN++    
Sbjct: 239 RLVALQAGELDLVFGGGGHGGGQISLEAFDALKKGGKYATYLSPPQASRVIALNSKSGPT 298

Query: 281 NHADVRQAISLAINREGIAQSVLKLPGSEAHQLFSPALGAWHLADKTQPQRH-LATAQTL 339
               VR+AI   IN++ + + +     + A  LF P      L  K  P  H  A A+ L
Sbjct: 299 ADIAVRKAILHTINKDAMVKGIFLNAEARADALFPPTSPYCDL--KLPPYAHDTARAEAL 356

Query: 340 LANQGW-TLNDQGLLEREGQAFRVQLLTYADRPELPLIATALQAQLKEIGIQVDIAIDNS 398
           L   GW   N +G   +EG+   V L    +      IA  LQ++L  +G+Q ++  +  
Sbjct: 357 LDEAGWKRTNPKGPRMKEGKPLTVDLCFVGNDALQKAIAEFLQSELARVGVQANLIGEEE 416

Query: 399 SAIPAKHHDGTLEMALIARNFGTIADPLPLLLSDFATHQGSDWGPTNWSSPQFSQL---L 455
            AI  +  +G   M +    +G   DP    +S       +D+       P  + L   +
Sbjct: 417 DAIGERQKNGAFGM-VFGDTWGAPYDP-HSFVSGMRVPTHADY-QAQLGLPMKADLDAWI 473

Query: 456 AELSTESDNARYQQLAAQASQLLADEMPLIPVTYYRQIVSVNKRVAGFSF 505
            ++   +D    Q L       L D+   +P+TY   +V    RV G  F
Sbjct: 474 GKVLVTTDETARQNLYRDILTTLHDQAVYLPLTYQTSMVVHTARVDGVHF 523