Pairwise Alignments

Query, 521 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 525 a.a., peptide ABC transporter, periplasmic peptide-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 90.1 bits (222), Expect = 2e-22
 Identities = 112/492 (22%), Positives = 193/492 (39%), Gaps = 71/492 (14%)

Query: 60  LFSRLQVVESLVGINENSQPYPLLAKSWTVSDDGLVWRFQIRPEVQFHDGSQLTAQAAAT 119
           ++SRL   +++ G     Q  P LA SW  SDDGL +RF +R  V+F   S+ T      
Sbjct: 46  IYSRLVDYDAISG-----QLVPALATSWAESDDGLSYRFTLRENVKFQHSSRFTPSRYFN 100

Query: 120 ALN---------------HALGKPG------VIKQVPIKAITAQNDQVVIE--------- 149
           A +               H + + G      +     + ++   ND  V+          
Sbjct: 101 ADDVLFSFNRIIDTHHPYHDVSRTGYPFFQSIGFSEQVNSVEKINDHEVVFRLARKDASF 160

Query: 150 LNTVYRPLAAVL----AHYSLAIASPSSYDASGNVIRLLGTGPYQIAQLQAPHKASVIRF 205
           L+ +    A +L    A   LA+  P + D        +GTGP+ +            R 
Sbjct: 161 LSNLATDFAVILSSEYAEQQLALGHPENVDHFA-----IGTGPFTLVHYAKNEYIRYRRN 215

Query: 206 NAYWGKPASIETINYLAGHRSESRALLAQTGQADLVYTLDPISIPSLQQSHNLDLYIESM 265
             +WG+PA++E + Y    +S  R      G   +        +P ++Q   L   IES 
Sbjct: 216 PDFWGEPANVEMLVYDITPKSTVRLAKLIAGDCSVSALPKAGELPVIKQHEQLK--IESQ 273

Query: 266 P--RTVLIKLNNEHPLLNHADVRQAISLAINREGIAQSVLKLPGSEAHQLFSPALGAWHL 323
           P         N + P L+   VR+A++ A++++ I ++V +    EA  +  PA  A+  
Sbjct: 274 PGLNVAFWAFNTQKPPLDDVRVRRALAHAVDKQNILRAVYQNTAIEAIGVLPPASWAYDS 333

Query: 324 ADKT---QPQRHLATAQTLLANQGWTLNDQGLLEREGQAFRVQLLTYADRPELPLIATAL 380
             K     PQ+    A+ LL   G  +N+  +            +  A  P     A  +
Sbjct: 334 NKKLLDYNPQK----ARDLLTEAG--INNLSI------DIWAMPVARAYNPNTLKTAELI 381

Query: 381 QAQLKEIGIQVDIAIDNSSAIPAKHHDGTLEMALIARNFGTIADP----LPLLLSDFATH 436
           Q+ L  IG++V+I   + S    +      +  LI  N    +DP     PLL     + 
Sbjct: 382 QSDLANIGVKVNIISYDWSVFTQRLSRDEYDSVLIGWNADN-SDPDNFFTPLLS---CSS 437

Query: 437 QGSDWGPTNWSSPQFSQLLAELSTESDNARYQQLAAQASQLLADEMPLIPVTYYRQIVSV 496
             S+   + W + +F  +L         A  +Q+  QA   LAD++P++ + + +++   
Sbjct: 438 MQSNNNRSRWCNKEFDAILDRAREVPTQAERKQIYQQAEAFLADQVPMLNLAHAKRVALT 497

Query: 497 NKRVAGFSFDPF 508
              V      PF
Sbjct: 498 RNNVHDMQLTPF 509