Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 1977 a.a., Signal transduction histidine kinase CheA (EC 2.7.3.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  229 bits (585), Expect = 8e-64
 Identities = 139/384 (36%), Positives = 210/384 (54%), Gaps = 17/384 (4%)

Query: 325  VDIEKVDNLINLVGELVITQSMLTELGNDFSMDKLDKLKAGLAQLLQN----SKDLQENV 380
            +++++   L  L   L  + S L EL      + LD+       LLQ     + +LQE +
Sbjct: 1453 LEMDRHSQLQQLSRALFESASDLLEL-----KETLDRSNHDAEVLLQQQGRINTELQEGL 1507

Query: 381  LNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELDKTVLERIVDPLVHLVRNG 440
            +  RM+P      R  R+VR +   LGK V+  +     E+D+ VLER+  PL H++RN 
Sbjct: 1508 MRTRMVPFERMLPRLKRIVRQVAQELGKDVEFLVGNADGEMDRNVLERMAAPLEHMLRNA 1567

Query: 441  IDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDDGAGIDCDKLWRKAVEKGVLE 500
            +DHG+E  DVR+A GKP  G I+L    +GG II +I DDGAG+  + +  KA+++G+L 
Sbjct: 1568 VDHGLEPADVRIAAGKPARGRISLDLSREGGDIIFDIRDDGAGVPLEAVRSKAIKRGLLA 1627

Query: 501  PQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDVVRRNIEELGGQIEVDSELGR 560
            P    SD++D+ ++  I  PGFSTAE+++ ISGRGVGMDVV   + +LGG + +DS  G+
Sbjct: 1628 PD---SDISDRDVLQFILQPGFSTAEKITQISGRGVGMDVVHEEVRQLGGSMVIDSTPGQ 1684

Query: 561  GSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESIQINTASVK-HAAGGIELYRLRE 619
            G  F I LP T+A+    +V   +  Y IPL TI   +++  A +  H       Y    
Sbjct: 1685 GVHFRIRLPFTVAVNRALMVHCHEDQYAIPLNTIESIVRVLPAELDGHYQLDPPTYTYAG 1744

Query: 620  ENIPILRLQDELAMGRS----GSLEKRLICFVESAGHRVGLLVDDLLDQQQVVIKSLESN 675
            +   +  L + L  G      G  +   +  V+     V + VD     +++V+KSL   
Sbjct: 1745 QRYELCYLGELLKTGARPKLLGQSQPLPVLLVQCNERHVAVQVDATAGTREIVVKSLGPQ 1804

Query: 676  YAKVAGISGATILGDGSVSLILDI 699
            ++ V G+SGATILGDG V LILD+
Sbjct: 1805 FSAVQGLSGATILGDGRVVLILDL 1828



 Score = 38.5 bits (88), Expect = 3e-06
 Identities = 84/398 (21%), Positives = 156/398 (39%), Gaps = 42/398 (10%)

Query: 8    LRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFTH 67
            L KIF  E + +L +L    L      + L+  + + RA H++KG A    +  I+E   
Sbjct: 769  LLKIFDNEAQGHLASLN-RFLDQSADHLPLQASDELQRALHTLKGSASMAGVLPIAELAG 827

Query: 68   AVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVGAELQALL 127
            A++      R     L    V+ LL++  ++R  L     E        + +    QALL
Sbjct: 828  AMDELAREYRVHLIALDLDEVELLLEAEGLLRRGLRQLHSEPLAAIPGAEDLILRAQALL 887

Query: 128  ADQ------GADRVMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVPHETLFYSGN 181
            A++        D+V+   +      +      D +   ++  Q W+    P E     G 
Sbjct: 888  AERLHAANNAPDKVLRTKRDPQLINNFLAQGMDILLDAESLLQRWQQH--PGE-----GQ 940

Query: 182  DPLRILRELRELGSEYQIELDHQALPELAEIDPELCYLSWTIRLTGDVSENDVRELFDWV 241
            +   +L EL  LG       +   L +L  +D ELC     + L G V E+ +    ++ 
Sbjct: 941  ELSALLDELTTLG-------EGAHLADLHPVD-ELC--EALLDLYGAVEESSLAVSNEFF 990

Query: 242  EDECDLHIAPI-LSDEASA--HVEDEQAAPAATLQSNPQTQVEPVAIVDLPAVEPPVATV 298
            ++    H A I + DE +A  HV   Q A    L+   Q  ++P A   + +      ++
Sbjct: 991  QEAQRAHEALIDMLDELAAGQHVH-PQPARVQALRRLLQESLDPSATGLIRSDGSRTLSI 1049

Query: 299  APVIANPKESATNKPAKTDSSVSSIRVDIEKVDNLINLVGELVITQSMLTELGNDFSMDK 358
              +     E   + P  T      + + +E+  +++    + +  Q  L +  N   +  
Sbjct: 1050 RELSHATAEMERDAPVDTSMEDDLVAIFLEEAQDILESAAQAL--QRWLADPDNGAPLSS 1107

Query: 359  LDK----LKAG--------LAQLLQNSKDLQENVLNIR 384
            L +    LK G        ++ L Q  ++L E +++ R
Sbjct: 1108 LQRDLHTLKGGARMADIRPVSDLAQELENLYEGLVDRR 1145



 Score = 37.4 bits (85), Expect = 7e-06
 Identities = 18/64 (28%), Positives = 29/64 (45%)

Query: 290  AVEPPVATVAPVIANPKESATNKPAKTDSSVSSIRVDIEKVDNLINLVGELVITQSMLTE 349
            AV  P     P+++ P   A   P         ++V  E +D+L+NL GE  I +  + +
Sbjct: 1341 AVSAPEPVPTPIVSPPAAPARPDPGAAGDGADMVKVSAELLDDLVNLAGETSIFRGRIEQ 1400

Query: 350  LGND 353
              ND
Sbjct: 1401 QVND 1404



 Score = 35.8 bits (81), Expect = 2e-05
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 4/138 (2%)

Query: 7    QLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFT 66
            +L +IF  E  + L++    LL+      + + + T+ R  H++KGGA    +  I +  
Sbjct: 1213 ELLEIFLEEGFDILDSSGAALLRWQEEPSNRQAVETLLRDLHTLKGGARMVEIVPIGDLA 1272

Query: 67   HAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVGAELQAL 126
            H +E   + +     Q T      L  S D +  MLD+          L  ++ A++QA+
Sbjct: 1273 HELENLYEGLSAGLLQPTPALFTLLQSSHDRLAQMLDA--VRAGHPCPLADRLIAQIQAV 1330

Query: 127  LADQ--GADRVMSQAQPV 142
               Q   A + +S  +PV
Sbjct: 1331 NHSQENAAPQAVSAPEPV 1348



 Score = 32.0 bits (71), Expect = 3e-04
 Identities = 61/310 (19%), Positives = 111/310 (35%), Gaps = 37/310 (11%)

Query: 6   EQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEF 65
           ++LR++F  E  E L+ L   L +      D   L+ + RA H++KG         + E 
Sbjct: 628 DELREVFLEETGEVLDVLREYLPRWSAHPDDHGALSELRRAFHTLKGSGRMVRALVLGEL 687

Query: 66  THAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVGAELQA 125
             AVE  L+ +  +  +  A            +R +++   Q   +  AL  +  A  Q 
Sbjct: 688 AWAVENLLNRVLERSVEPQAS-----------VRQLVEDTVQ---LLPALVAEFAANHQR 733

Query: 126 LLADQGADRVMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVPHETLFYSGNDPLR 185
              D   DR+ ++A  ++      +     +A  D       ++   +E   +       
Sbjct: 734 QRDD--VDRLAARAHVLAKGGDEEDEDEQDVAALDPLL----LKIFDNEAQGH------- 780

Query: 186 ILRELRELGSEYQIELDHQALPELAEIDPELCYLSWTIRLTGDVSENDVRELFDWVEDEC 245
               L  L        DH  L    E+   L  L  +  + G +   ++    D +  E 
Sbjct: 781 ----LASLNRFLDQSADHLPLQASDELQRALHTLKGSASMAGVLPIAELAGAMDELAREY 836

Query: 246 DLHIAPILSDEASAHVEDEQAAPAATLQSNPQTQVEPVAIVDLPAVEPPVATVAPVIANP 305
            +H+  +  DE    +E    A     +   Q   EP+A +  P  E  +     ++A  
Sbjct: 837 RVHLIALDLDEVELLLE----AEGLLRRGLRQLHSEPLAAI--PGAEDLILRAQALLAER 890

Query: 306 KESATNKPAK 315
             +A N P K
Sbjct: 891 LHAANNAPDK 900