Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 754 a.a., Sensor histidine kinase/response regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  229 bits (585), Expect = 3e-64
 Identities = 153/484 (31%), Positives = 246/484 (50%), Gaps = 59/484 (12%)

Query: 267 APAATLQSNPQTQVEPVAIVDLPAVEPPVATVAPVIANPKESATNKPAKTDSSVSSIRVD 326
           APA  L S  +T VEP+ I +LP VEPP AT         E A  +   T+     +RV 
Sbjct: 134 APAVVLPS-VETAVEPLRI-ELPDVEPPPAT---------EPAPQRKRVTEGGERVLRVT 182

Query: 327 IEKVDNLINLVGE-LVITQSM--------------------LTELGNDFSMDKLD----- 360
            E++++L++L  + LV TQ +                    L EL        L      
Sbjct: 183 AERLNSLLDLSSKSLVETQRLKPWLATMQRLKRQQSTGLRALEELNVHLKDHALSLQAQE 242

Query: 361 ------KLKAGLAQLL---------------QNSKDLQENVLNIRMLPMSFAFSRFPRLV 399
                 +L A   QLL               Q ++ L +  L  RM P +   S   R+V
Sbjct: 243 ALGDARRLLAETQQLLAQKTAELDEFAWQASQRAQVLYDTALACRMRPFADVLSGQARMV 302

Query: 400 RDLCGRLGKKVDLQIQGEQTELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKPET 459
           RDL   L K+V L+I+GE+T++D+ VLE++  PL HL+RN +DHG+E P+ R+  GKP  
Sbjct: 303 RDLGRSLDKQVRLEIEGEKTQVDRDVLEKLEAPLTHLLRNAVDHGIEPPEQRILAGKPAE 362

Query: 460 GVITLKAFHQGGSIIVEISDDGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLIFA 519
           GVI L+A HQ G +++E++DDGAG+D +++ R  VE+G L P+   + L++++++  +F 
Sbjct: 363 GVIRLRASHQAGLLVLELADDGAGVDLERVRRSIVERG-LSPEQTAASLSEEELLTFLFL 421

Query: 520 PGFSTAEQVSDISGRGVGMDVVRRNIEELGGQIEVDSELGRGSRFTISLPLTLAILDGQL 579
           PGFS  ++V+++SGRGVG+D V+  + +L G + ++   G GSRF + +PLTL+++   +
Sbjct: 422 PGFSLRDKVTEVSGRGVGLDAVQHMVRQLRGAVVLEQTAGEGSRFHLEVPLTLSVVRSLV 481

Query: 580 VKVADQVYVIPLLTIVESIQINTASVKHAAGGIELYRLREENIPILRLQDELAMGRSGSL 639
           V+V D+ Y  PL  I     +    +    G    +        +   Q        GS 
Sbjct: 482 VEVGDEAYAFPLAHIERMCDLAPEDIVQVEGRQHFWHEGRHIGLVAASQLLNRPATQGSN 541

Query: 640 EKRLICFVESAGHRVGLLVDDLLDQQQVVIKSLESNYAKVAGISGATILGDGSVSLILDI 699
           +   +  +       G+ V+  + ++ +V+  L+    KV  IS   +L DGSV LI+D+
Sbjct: 542 QTLKVVVIRERETIYGVAVERFIGERTLVVLPLDERLGKVQDISAGALLDDGSVVLIVDV 601

Query: 700 PGLI 703
             L+
Sbjct: 602 EDLL 605



 Score = 46.6 bits (109), Expect = 5e-09
 Identities = 26/91 (28%), Positives = 44/91 (48%)

Query: 8   LRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFTH 67
           L ++F +E    ++ L   LL L+      + L +  RAAHS+KG A    +       H
Sbjct: 11  LLELFSLEAEAQVQVLSAGLLALERDPTQADYLESCMRAAHSLKGAARIVGVDAGVSVAH 70

Query: 68  AVETYLDLIRNQKKQLTAQGVDTLLKSCDVI 98
            +E  L   + Q+  L A+ +D LL+  D++
Sbjct: 71  VMEDCLVSAQEQRLVLGAEHIDALLQGTDLL 101