Pairwise Alignments
Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056
Subject, 1967 a.a., Signal transduction histidine kinase CheA (EC 2.7.3.-) from Pseudomonas fluorescens FW300-N1B4
Score = 234 bits (597), Expect = 3e-65
Identities = 132/337 (39%), Positives = 199/337 (59%), Gaps = 22/337 (6%)
Query: 375 DLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELDKTVLERIVDPLV 434
+LQE ++ RM+P R R+VR + LGK VD + + E+D+ VLER+ PL
Sbjct: 1492 ELQEGLMRTRMVPFERMLPRLKRIVRQVASELGKDVDFVVGNAEGEMDRNVLERMAAPLE 1551
Query: 435 HLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDDGAGIDCDKLWRKAV 494
H++RN +DHG+E +VR+A GKP G ITL +GG II +I DDGAG+ D + RKA+
Sbjct: 1552 HMLRNAVDHGLESAEVRIAAGKPAQGKITLDLSREGGDIIFDIRDDGAGVPLDAVRRKAI 1611
Query: 495 EKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDVVRRNIEELGGQIEV 554
++G+L+P SD++D+ ++ I PGFSTAE+++ ISGRGVGMDVV + +LGG + +
Sbjct: 1612 KRGLLDPD---SDISDRDVLQFILQPGFSTAEKITQISGRGVGMDVVHEEVRQLGGSMTI 1668
Query: 555 DSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESIQI-----------NTA 603
DS G+G F I LP T+++ +V+ + Y IPL TI +++ +
Sbjct: 1669 DSVPGQGVHFRIRLPFTVSVNRALMVQCGEDQYAIPLNTIDGIVRVLPNELEGHYRLDPP 1728
Query: 604 SVKHAAGGIELYRLREENIPILRLQDE-LAMGRSGSLEKRLICFVESAGHRVGLLVDDLL 662
+ ++A EL L E +L+ +G+S L + V+ V + VD +
Sbjct: 1729 TYEYAGQRYELCYLGE----LLKTSTRPKLLGQSLPLP---VLLVQCNERHVAVQVDAMA 1781
Query: 663 DQQQVVIKSLESNYAKVAGISGATILGDGSVSLILDI 699
+++V+KSL +A V G+SGATILGDG V LILD+
Sbjct: 1782 GTREIVVKSLGPQFAAVQGLSGATILGDGRVVLILDL 1818
Score = 37.7 bits (86), Expect = 6e-06
Identities = 26/98 (26%), Positives = 45/98 (45%)
Query: 7 QLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFT 66
+L +IF E + +E LL+ + + T+ R H++KGGA + I +
Sbjct: 1214 ELLEIFLEEGFDIIENSGAALLRWQAEPSSRQEMETLLRDLHTLKGGARMVEIVPIGDLA 1273
Query: 67 HAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDS 104
H +E + + Q TA+ L +S D + MLD+
Sbjct: 1274 HELEFLYEGLSAGVLQPTAELFSLLQRSHDRLAQMLDA 1311
Score = 36.6 bits (83), Expect = 1e-05
Identities = 80/361 (22%), Positives = 143/361 (39%), Gaps = 50/361 (13%)
Query: 6 EQLRKIFHVECRENLETLEGELLQLDPSQVDLEV-LNTIFRAAHSIKGGAGTFNLHEISE 64
+++ IF E + LE+ G+ LQ S D L ++ R H++KGGA + + +
Sbjct: 1071 DEIVSIFLEEAVDILESA-GQALQRWLSDPDNAAPLLSLQRDLHTLKGGARMAEVEPVGD 1129
Query: 65 FTHAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVGAELQ 124
H +E+ + + +++ + L +S D + LD + + + G +Q
Sbjct: 1130 LAHELESLYEGLVDRRYSHSETLAQLLQQSHDRLAMFLDQLQHNRPLGDP-----GELIQ 1184
Query: 125 ALL----ADQGADRVMSQAQPVSSNTHTSNMHA-------DAIAIPDATAQGWRIRFVPH 173
A+ + G+ V+ A S H S + D I A W+ P
Sbjct: 1185 AIREFRQGNAGSAEVIEPAASNDSAGHDSELLEIFLEEGFDIIENSGAALLRWQAE--PS 1242
Query: 174 ETLFYSGNDPLRILRELREL-GSEYQIELDHQALPELAEIDPELCYLSWTIRLTGDVSEN 232
S + +LR+L L G +E+ + ++ EL +L L+ V +
Sbjct: 1243 -----SRQEMETLLRDLHTLKGGARMVEI-----VPIGDLAHELEFLYEG--LSAGVLQ- 1289
Query: 233 DVRELFDWVEDECDLHIAPILSDEASAHVEDEQAAPAATLQSNPQTQVEPVAIVDLPAVE 292
ELF ++ D L+ A + PA L ++ + PAV
Sbjct: 1290 PTAELFSLLQRSHDR-----LAQMLDATRAGQPLPPADRL-------IDAIKNFSHPAVP 1337
Query: 293 PPVATVAPVIANPKESATNKPAKTDSSVSSIRVDIEKVDNLINLVGELVITQSMLTELGN 352
A V +A E+ +P TD+ ++V E +D+L+NL GE I + + + N
Sbjct: 1338 ETSAPVTLPVAPKAETTALQPEGTDT----VKVSAELLDDLVNLAGETSIFRGRIEQQVN 1393
Query: 353 D 353
D
Sbjct: 1394 D 1394
Score = 35.0 bits (79), Expect = 4e-05
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 6 EQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEF 65
++LR +F E E LE LE L + S VL + RA H++KG + E
Sbjct: 628 DELRDVFLEETDEVLEILEEYLPRWSASPDSTSVLTELRRAFHTLKGSGRMVRALVLGEL 687
Query: 66 THAVETYLDLI 76
AVE L+ +
Sbjct: 688 AWAVENLLNRV 698
Score = 31.2 bits (69), Expect = 5e-04
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
Query: 8 LRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFTH 67
L +IF E +L +L L V L+ + + RA H++KG A + I+E
Sbjct: 770 LLEIFRNEAETHLSSLN-RFLDQAAEHVPLQASDELQRALHTLKGSASMAGVLPIAELAA 828
Query: 68 AVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVGAELQALL 127
+++ + + L V+ LL++ + R L + + + + + QALL
Sbjct: 829 SLDELAREYKAHRIALDLDEVELLLEAEGLFRLGLRQLKSDPLAEIPDARSLIERTQALL 888
Query: 128 ADQ 130
A++
Sbjct: 889 AER 891