Pairwise Alignments
Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056
Subject, 2408 a.a., Chemotaxis protein histidine kinase and related kinases from Pseudomonas stutzeri RCH2
Score = 248 bits (634), Expect = 2e-69
Identities = 210/709 (29%), Positives = 328/709 (46%), Gaps = 92/709 (12%)
Query: 7 QLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFT 66
++ IF E + LE +E L + D + D L + R H++KGGA ++
Sbjct: 1619 EILDIFVEEADDLLEEMESALGRWDAGREDAAPLADMLRVLHTLKGGARLAGQTDLGNMA 1678
Query: 67 HAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVGAELQAL 126
H +E L + +Q A D+L LD ++ A+ + ++Q L+A
Sbjct: 1679 HDLEQML----GEAQQQGAPWPDSLF---------LDVQQGYDALLKDVEQ-----LRAN 1720
Query: 127 LADQGADRVMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVPHETLFYSGNDPLRI 186
LA G R S +S ++ + P AQ V T + P ++
Sbjct: 1721 LASDGETRSDSSE---ASQPEAQDLEPQLPSEPLMLAQP----IVAASTQPAPSSSPAKV 1773
Query: 187 LRELRELGSEYQIELDHQALPELAEIDPELCYLSWTIRLTGDVS------ENDVRELFDW 240
L +R Q +A EL ++ EL L + L G+ S E V ++ +
Sbjct: 1774 LPFIRRAQLAAQEAAARRAPQELVKVPAEL--LEGLVNLAGETSIFRGRVEQQVSDV-GF 1830
Query: 241 VEDECDLHIAPILSDEASAHVEDEQAAPAATLQSNPQTQVEPVAIVDLPAVEPPVATVAP 300
E + I + E + A + S Q + E D +E
Sbjct: 1831 TLGEMEATIERVRDQLRRLDTETQ-----AQILSRYQAEAERAGYDDFDPLE-------- 1877
Query: 301 VIANPKESATNKPAKTDSSVSSIRVDIEKVDNLINLVGELVITQSMLTELGNDFSMDKLD 360
+++ L L L + S L +L + D
Sbjct: 1878 --------------------------MDRHSQLQQLSRALFESASDLLDLKETLAARNRD 1911
Query: 361 KLKAGLAQLLQNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTE 420
L Q N+ +LQE ++ RM+P R R+VR + G LGK+V+ + E
Sbjct: 1912 AETLLLQQARVNT-ELQEGLMRTRMVPFERLVPRLRRIVRQVAGELGKQVEFMVGNATGE 1970
Query: 421 LDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDD 480
+D++VLERIV PL H++RN +DHG+E + R A GKPE G I L +GG I++ ++DD
Sbjct: 1971 MDRSVLERIVAPLEHMLRNAVDHGIESVERRRAVGKPEQGTIRLDLAREGGDIVLTLADD 2030
Query: 481 GAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDV 540
GAGI+ D + RKA+E+G++ SDL++ +I+ I GFSTAE+V+ ISGRGVGMDV
Sbjct: 2031 GAGINLDAVRRKAIERGLM---VADSDLSEHEILQFILEAGFSTAERVTQISGRGVGMDV 2087
Query: 541 VRRNIEELGGQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESIQI 600
V +++LGG + ++S LG+G+RF I LP T+++ +V + +Y IPL TI +++
Sbjct: 2088 VHSEVKQLGGSMTIESTLGQGTRFLIRLPFTVSVNRALMVYSGEDLYAIPLNTIEGIVRV 2147
Query: 601 NTASVK----------HAAGGIELYRLREENIPILRLQDELAMGRSGSLEKRLICFVESA 650
+ ++ AG + Y LR + Q +G+S L + V S
Sbjct: 2148 SPYELEAYYQPDAPRFEYAG--QAYELRYLGDLLNNGQKPKLVGQSLPLP---VILVRSK 2202
Query: 651 GHRVGLLVDDLLDQQQVVIKSLESNYAKVAGISGATILGDGSVSLILDI 699
H V + VD L +++V+KSL +A V GISGATILGDG V +ILD+
Sbjct: 2203 EHSVAVQVDSLAGSREIVVKSLGPQFAGVHGISGATILGDGRVVVILDL 2251
Score = 37.0 bits (84), Expect = 1e-05
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 6 EQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEF 65
E L ++F E E LET+ +L + D E L + RA H++KG I E
Sbjct: 746 EDLLEVFIEEAAEVLETIGEQLPRWFADTEDKEALGEVRRAFHTLKGSGRMVRALIIGEL 805
Query: 66 THAVETYLDLIRNQKKQLT 84
++E L+ + ++ Q+T
Sbjct: 806 AWSIENLLNRVLDRSIQVT 824
Score = 31.2 bits (69), Expect = 6e-04
Identities = 77/341 (22%), Positives = 138/341 (40%), Gaps = 46/341 (13%)
Query: 2 ALDMEQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHE 61
ALD QL +IF E +L TL L ++ V + + RA H++KG A +
Sbjct: 899 ALD-PQLLEIFRNEAEAHLTTLVSFLADC-AQRLPQPVTDALQRALHTLKGSAHMAGILP 956
Query: 62 ISEFTHAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQE--TAIDEALK--Q 117
++E +E + Q+ + L ++ ++R L + + E I+ A +
Sbjct: 957 VAEIATPLEKMAKEFKTNLIQMDLAEAELLHEAELLLRKGLTNLDHEPLAPIEGAAEFLL 1016
Query: 118 QVGAELQALLADQGADRVMSQAQPVSSNTHTSNMHA-------DAIAIPDATAQGWRIRF 170
+V QA L + GA + + T NM A D + + + WR
Sbjct: 1017 KVHTLHQARLVEAGA-----RQHNDAGETRDPNMIALFLSEGMDILLDAEDLLRSWREHP 1071
Query: 171 VPHETLFYSGNDPLRILRELRELGSEYQIELDHQALPELAEIDPELCYLSWTIRLTGDVS 230
+ L +L+EL LG ++ LP++ LC + +RL V
Sbjct: 1072 AERQEL-------SALLQELTTLGQGAKM----ADLPQM----EALCQV--LLRLYAVVE 1114
Query: 231 ENDV---RELFDWVEDECDLHIAPILSDEASAHVEDEQAAPAATLQSNPQTQVEPVAIVD 287
E + FD VE + + ++ A+A EQ+ A L++ ++P+++ +
Sbjct: 1115 EGRLAVSERFFDDVEQGHEA-LVGMMDQVAAALQVSEQSELVARLEALLAEAIDPLSL-E 1172
Query: 288 LP---AVEP---PVATVAPVIANPKESATNKPAKTDSSVSS 322
P +VEP VA AP+ P E+ A+ ++ +
Sbjct: 1173 QPFERSVEPDQVAVAIEAPLTLLPAEAEAEAEAEAEAEAEA 1213
Score = 31.2 bits (69), Expect = 6e-04
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 40 LNTIFRAAHSIKGGAGTFNLHEISEFTHAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIR 99
L+ + R H++KGGA + I + H +E+ + + + + + + L +S D +
Sbjct: 1270 LSALLRDLHTLKGGARMAAIRPIGDLAHELESLYEGLSDGRYVHSQELATLLQRSHDHLA 1329
Query: 100 NMLDSREQETAID--EALKQQVGAELQALL 127
L+ ++ET + +AL + + A Q +L
Sbjct: 1330 LQLEQLQRETPMSCADALIESMQAFRQGVL 1359
Score = 30.4 bits (67), Expect = 0.001
Identities = 82/376 (21%), Positives = 142/376 (37%), Gaps = 40/376 (10%)
Query: 4 DMEQLRKIFHVECRENLETLEGELLQLDPSQVDLE---VLNTIFRAAHSIKGGAGTFNLH 60
D+E+ ++ + E + +E L D++ L + R H++KGGA ++
Sbjct: 1466 DVERDPELVEIFLEEGFDLIESAAGGLQRWMADVDNSFELEALQRDLHTLKGGARMADIR 1525
Query: 61 EISEFTHAVE-TYLDLIRNQKKQLTAQGVDTLLKSC-DVIRNMLDS--REQETAIDEALK 116
EI + +H +E Y L + + + LL++C D + ML++ Q EAL
Sbjct: 1526 EIGDLSHELEFLYEGLCAGNYR--ASPELFGLLQACQDRLAEMLEAVRAHQPVPSGEALI 1583
Query: 117 QQV-----GAELQALLADQGADRVMSQAQPVSSNTHTSNM---HADAIAIPDATAQG-WR 167
+ + E Q + + + S+ ++ AD + +A G W
Sbjct: 1584 ETIRRFRNNPEEQLSIPSSVSLKAAQDDAQQSAEAEILDIFVEEADDLLEEMESALGRWD 1643
Query: 168 IRFVPHETLFYSGNDPLRILREL----RELGSEYQIELDHQALPELAEIDPELCYLSWTI 223
L D LR+L L R G + H L E + W
Sbjct: 1644 AGREDAAPL----ADMLRVLHTLKGGARLAGQTDLGNMAHDLEQMLGEAQQQ--GAPWPD 1697
Query: 224 RLTGDVSENDVRELFDWVEDECDLHIAPILSDEASAHVEDEQAAPAA-----TLQSNPQT 278
L DV + +D + + + A + SD + E + P A L S P
Sbjct: 1698 SLFLDVQQG-----YDALLKDVEQLRANLASDGETRSDSSEASQPEAQDLEPQLPSEPLM 1752
Query: 279 QVEP-VAIVDLPAVEPPVATVAPVIANPKESATNKPAKTDSSVSSIRVDIEKVDNLINLV 337
+P VA PA A V P I + +A A+ + ++V E ++ L+NL
Sbjct: 1753 LAQPIVAASTQPAPSSSPAKVLPFIRRAQLAAQEAAARR-APQELVKVPAELLEGLVNLA 1811
Query: 338 GELVITQSMLTELGND 353
GE I + + + +D
Sbjct: 1812 GETSIFRGRVEQQVSD 1827