Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 723 a.a., Chemotaxis protein histidine kinase and related kinases from Pseudomonas stutzeri RCH2

 Score =  363 bits (933), Expect = e-104
 Identities = 248/737 (33%), Positives = 389/737 (52%), Gaps = 54/737 (7%)

Query: 6   EQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEF 65
           E++ + F VE  E LE L  +L++L+ S  D+ +LN IFR  H++KGGAG   LHE+ E 
Sbjct: 7   EEILQDFLVEAGEILELLSEQLVELESSPDDMALLNAIFRGFHTVKGGAGFLQLHELVEC 66

Query: 66  THAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVGAELQA 125
            H  E   D++R  ++++ ++ +D +L++ D +  M     +      A +     EL A
Sbjct: 67  CHIAENVFDILRKGERRVDSELMDVVLQALDSVNEMFGQVRERVEPTPASR-----ELLA 121

Query: 126 LLADQGADRVMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFV----------PHET 175
            LA          A+P S++     M    +A P   A       +          P   
Sbjct: 122 ALA--------RLAEPASADEPAVPMEPAPVAEPQVEAVDAEFEQMLAAVQSSDSEPAAA 173

Query: 176 LFYSGNDPLRILRELRELGSEYQIELDHQALPELAEIDPELCYLSWTIRLTGDVSENDVR 235
               G D +    E   L  +   +         A  +PE+     +  +T D  E  + 
Sbjct: 174 QVSGGGDEITD-DEFESLLDQLHGKGQFSVSAASAAPEPEVVVAPASDEITDDEFEALLD 232

Query: 236 EL-----FDWV-----EDECDLHIAPILSDEASAHVEDEQAAPAATLQSNPQTQVEPVAI 285
           +L     F+ V     E       AP  +  AS  + D++   A   Q + + + EP   
Sbjct: 233 QLHGKGKFEPVGSTSTEPATPAAAAPASNTSASDEITDDEFE-ALLDQLHGKGKFEPAVA 291

Query: 286 VDLPAV------EPPVATVAPVIANPKESATNKPAKTDS------SVSSIRVDIEKVDNL 333
              PAV      +P  A  AP  A P  +A +KPA   +      + +++RVD  ++D +
Sbjct: 292 EVAPAVPSKPEPKPEAARAAPAKAAPA-AAVSKPAAVVAEKAPAEAETTVRVDTARLDEI 350

Query: 334 INLVGELVITQSMLTELGNDFSMDKLDKLKAGLAQLLQNSKDLQENVLNIRMLPMSFAFS 393
           +N+VGELV+ ++ L  LG++   + + K  + L  +   + DLQ  V+  RM P+   F 
Sbjct: 351 MNMVGELVLVRNRLVRLGSNSGDEAMAKAVSNLDVV---TADLQSAVMKTRMQPIKKVFG 407

Query: 394 RFPRLVRDLCGRLGKKVDLQIQGEQTELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLA 453
           RFPRLVRDL   L K+++L++ GE+T+LDK ++E + DPLVHLVRN +DHG+EMP+ R A
Sbjct: 408 RFPRLVRDLARSLKKEINLELVGEETDLDKNLVEALADPLVHLVRNAVDHGIEMPEEREA 467

Query: 454 KGKPETGVITLKAFHQGGSIIVEISDDGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQI 513
            GKP TG + L A  +G  I++ ISDDG G+D + L  KAVEKG+LE +     L+D + 
Sbjct: 468 AGKPRTGRVVLSAEQEGDHILLIISDDGKGMDANVLRAKAVEKGMLE-KDAADRLSDLEC 526

Query: 514 INLIFAPGFSTAEQVSDISGRGVGMDVVRRNIEELGGQIEVDSELGRGSRFTISLPLTLA 573
            NLIFAPGFST  ++SD+SGRGVGMDVV+  I +L G + V S  G+GSR  I +PLTLA
Sbjct: 527 YNLIFAPGFSTKTEISDVSGRGVGMDVVKTKISQLNGTVNVFSTKGQGSRVVIKVPLTLA 586

Query: 574 ILDGQLVKVADQVYVIPLLTIVESIQINTASVKHAAGGIELYRLREENIPILRLQDELAM 633
           I+   +V + +Q +  PL+ + E   ++  S  +   G E+  +R++ +P+  L+  L  
Sbjct: 587 IMPTLMVMLGNQAFAFPLVNVNEIFHLD-LSRTNVVDGQEVVIVRDKALPLFYLKRWLIQ 645

Query: 634 GRSGSLEKRLICFVESAGHR-VGLLVDDLLDQQQVVIKSLESNYAKVAGISGATILGDGS 692
             +   ++     + S G++ +G +VD L+ Q++VVIK L        G+SGATI GDG 
Sbjct: 646 SAAEEEQREGHVVILSVGNQSIGFVVDQLVGQEEVVIKPLGKMLQGTPGMSGATITGDGR 705

Query: 693 VSLILDIPGLIAHFMKR 709
           ++LILD+P ++  + +R
Sbjct: 706 IALILDVPSMLKRYARR 722