Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 928 a.a., CheA signal transduction histidine kinase from Synechococcus elongatus PCC 7942

 Score =  193 bits (491), Expect = 3e-53
 Identities = 117/388 (30%), Positives = 205/388 (52%), Gaps = 17/388 (4%)

Query: 325 VDIEKVDNLINLVGELVITQSMLTELGNDFSM---DKLDKLKAGLAQLLQNSKDLQENVL 381
           +++++     ++  E++     L E  +D      +  D+L     Q+   +  LQ  + 
Sbjct: 389 LELDRFSGFHSISQEMMELLVRLREAASDIDFMVNEPFDQLTRNFQQI---TLQLQSELN 445

Query: 382 NIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELDKTVLERIVDPLVHLVRNGI 441
             RM+P S    + PR VR++  R GK   L+I+G+   +DK +L+++  P+ HL+ N +
Sbjct: 446 QTRMVPFSDLTDQLPRAVREISRRCGKGARLEIEGKDILIDKMILQKLQAPMTHLINNAL 505

Query: 442 DHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDDGAGIDCDKLWRKAVEKGVLEP 501
            HG+E  ++R  + K   G + ++A  QG   ++ ++DDGAGID +++  KA+ +G++ P
Sbjct: 506 SHGIETAEIRQYRNKSAEGTLVVRASLQGNRTLITVTDDGAGIDAEQVKLKALARGLITP 565

Query: 502 QTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDVVRRNIEELGGQIEVDSELGRG 561
           + + + +  ++I  L+F PGFST +Q  +++GRGVG+DVVRR + E+ G+I VDSELG+G
Sbjct: 566 E-EAAGMRVREIYELLFRPGFSTRDQADELAGRGVGLDVVRRALHEIQGEIVVDSELGKG 624

Query: 562 SRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESIQINTASVKHAAGG---IELYRLR 618
           + FT  LPLTL+I               P+ ++ E + I    +     G   ++ + L 
Sbjct: 625 TTFTFRLPLTLSITKALTCLHERARLAFPMDSVEEMLDIPQQRLAMDPQGQLRLDWHNLS 684

Query: 619 EENIPILRLQD-ELAMGRS------GSLEKRLICFVESAGHRVGLLVDDLLDQQQVVIKS 671
               P+  L D  L  GRS      G      I  + +    + +  D +  ++++VIK 
Sbjct: 685 LPVFPLSSLLDFHLPFGRSRYYNSLGDDGVVSIVVLRNDNEYLAVQTDQIEGEREIVIKQ 744

Query: 672 LESNYAKVAGISGATILGDGSVSLILDI 699
           +E   AK  GI G T+  DG V  I+D+
Sbjct: 745 IEGPIAKPLGILGITVRSDGQVMPIVDV 772



 Score = 53.1 bits (126), Expect = 6e-11
 Identities = 89/379 (23%), Positives = 145/379 (38%), Gaps = 64/379 (16%)

Query: 8   LRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFTH 67
           LR +F  E RENL+ L   + Q++    D +      RAAHS+KGGA         +   
Sbjct: 9   LRSLFLRETRENLQLLTQMIGQMEAGLPDAKTFADASRAAHSLKGGAALLKFETFRQLAA 68

Query: 68  AVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVGAELQALL 127
            +ET L L+   + +L    V             L  R     I    + + G E QA++
Sbjct: 69  GLETCLSLL--SEAELPDYEVSL----------PLFQRAAALLITATDRIEAGVEEQAVV 116

Query: 128 ADQGADRVMSQAQPVSSNTHTS-----NMHADAIAIPDATAQGWRIRFVPHETLFYSGND 182
            ++G + ++ Q Q +      +     +  A    + D   Q +    +P         D
Sbjct: 117 PEEG-NPLIEQLQVLQEMLQAAVQVPPDQSAVTSTLEDLLTQDFETVLLPPTPDLEQTLD 175

Query: 183 PLRILRELRELGSEYQIELDHQALPELAEIDPELCYLSWTIRLTGDVSENDVRELFDWVE 242
             ++L +L E  S    +      P L +++                      +L DW+E
Sbjct: 176 --QLLGDLEETPSPIAGQGSDGDRPALEDLN---------------------FDLEDWIE 212

Query: 243 DECDLHIAPILSDEASAHVEDEQAAPA-------ATLQSNPQTQVEPVAIVD--LPAV-- 291
                      S+E S  VE +  A         A L  +P  Q   + I D  L AV  
Sbjct: 213 ----------ASEEESETVEIDIVAQVKALEAAIADLTQHPHEQPLSLGIKDDILSAVIQ 262

Query: 292 EPPVATVAPVIANPKESATNKPAKTDSSV-SSIRVDIEKVDNLINLVGELVITQSMLTEL 350
             P   VA  +    ++ T    KT      ++RV + ++DNL NLVGE+V++++ L E 
Sbjct: 263 AAPRLPVALTLEPVAKARTQDNGKTPVVFEQTLRVPVRQLDNLSNLVGEIVVSRNTL-ES 321

Query: 351 GNDFSMDKLDKLKAGLAQL 369
                 + L+ L   + QL
Sbjct: 322 DQSHLRETLENLMLQVHQL 340