Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 952 a.a., CheA signal transduction histidine kinase from Synechococcus elongatus PCC 7942

 Score =  223 bits (568), Expect = 3e-62
 Identities = 130/396 (32%), Positives = 224/396 (56%), Gaps = 14/396 (3%)

Query: 334 INLVGELVI-TQSMLTELGNDFSMDKLDKLKAGLAQLLQNSKDLQENVLNIRMLPMSFAF 392
           ++LV + V+ T   + E+ +D   + L++ +     L + +K +Q  +  +RM P +   
Sbjct: 426 LHLVSQDVMETIVQIQEITSDIETN-LEETEQTEQSLRRTAKQMQGRLTQVRMRPFADLV 484

Query: 393 SRFPRLVRDLCGRLGKKVDLQIQGEQTELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRL 452
           +R+PR++R L    GK V L I GE T +D+ +LE + DPL+HLVRN  DHGVE P +R 
Sbjct: 485 NRYPRMIRQLGQEYGKDVRLIINGENTLVDRAILELLADPLLHLVRNAFDHGVESPQLRQ 544

Query: 453 AKGKPETGVITLKAFHQGGSIIVEISDDGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQ 512
           ++ K  T  I + A ++G   ++ I DDG G+D  K+ ++A   G+   Q+     +D++
Sbjct: 545 SRDKSPTATIEVSAAYRGNQTVITIRDDGCGVDLQKIRQRAQRMGL--DQSSLEAASDRE 602

Query: 513 IINLIFAPGFSTAEQVSDISGRGVGMDVVRRNIEELGGQIEVDSELGRGSRFTISLPLTL 572
           +++LIF PGF+TAEQV+++SGRGVGMDVVR N++++ G I+++++  +G+ FTI++P +L
Sbjct: 603 LLDLIFEPGFTTAEQVTELSGRGVGMDVVRTNLQQIRGDIQIETKPNQGTTFTITVPFSL 662

Query: 573 AILDGQLVKVADQVYVIPLLTIVESIQINTASVKHAAGGIELYRLREENIPILRLQDELA 632
           ++    L++V++ +  IP   I E I++N + + ++AG   L  L E  +P+L+L     
Sbjct: 663 SVARVLLIEVSNILVAIPTDVIEEIIELNPSWILNSAGQTVL-NLDEILVPLLQLDQWFQ 721

Query: 633 MGRS---------GSLEKRLICFVESAGHRVGLLVDDLLDQQQVVIKSLESNYAKVAGIS 683
             R           ++ +  +  V      VG+ VD    +Q+V I+ + S      G S
Sbjct: 722 FSRPCPPISLDGVPTINQPTVLLVNQGNSFVGIQVDRYWGEQEVTIRQVNSTIPLPPGFS 781

Query: 684 GATILGDGSVSLILDIPGLIAHFMKRSSSSTTKGKA 719
             TILGDG +  ++D   L+      +  S    KA
Sbjct: 782 SCTILGDGRIVPLVDTFSLLQWIQNSNVPSRLSLKA 817



 Score = 56.6 bits (135), Expect = 6e-12
 Identities = 95/407 (23%), Positives = 168/407 (41%), Gaps = 63/407 (15%)

Query: 8   LRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFTH 67
           +R  F  E  E L T+E EL+ L  +      ++ I RAAHSIKGGA     + +SE  H
Sbjct: 8   IRLQFLEEAEEYLGTIEKELVDLSQASDRRSQVDLILRAAHSIKGGAAMMGFNTLSELAH 67

Query: 68  AVETYLDLIRNQK------KQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVGA 121
            +E +  ++R+ K      ++   QGVD L +   V R   D   Q       L+ QV  
Sbjct: 68  QLEDFFKVMRSGKNFDQSLERQLLQGVDRLHQVLQVNRQGTDPSPQ------WLESQV-Q 120

Query: 122 ELQALLADQGADRVMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVPHETLFYSGN 181
            L A+L +Q  D        + S     +M +    + ++  +G   R    E++  +  
Sbjct: 121 PLFAVLREQFGDPQPDADLAMLSEEAGDDMRS---LLFESEVEGCLQRL---ESVLQTPE 174

Query: 182 DPLR------ILRELRELGSEYQIELDHQALPELAEIDPELCYLSWTIRLTGDVSENDVR 235
            P        + +EL  LG   ++    Q    +AE+   L      +R T      D+R
Sbjct: 175 HPCLLEEFAIVAQELAGLGQMLELSQFSQFCTSIAEL---LEQQPTDLRATATKILKDLR 231

Query: 236 ELFDWVEDECD-LHIAPILSDEASAHVEDEQAAPAATLQSN-------PQTQ-------- 279
                    C  L +   ++   S  V  +Q+    TL++N       PQT+        
Sbjct: 232 --------HCQALVLTQQINALPSQFVAQDQSPEGITLEANSGLAETFPQTKEVIHQNQI 283

Query: 280 ---------VEPVAIVDLPAVEPPVATVAPVIANPKESATNKPAKTDSSVSSIRVDIEKV 330
                       + + +   ++    T+     +P  +AT+  ++ + +  ++RV I+++
Sbjct: 284 TATRNSENIQSSLTVAEARQLDFTPETITTQTLHPPINATDLTSEINQA-RTVRVGIQQL 342

Query: 331 DNLINLVGELVITQSMLTELGNDFSMDKLDKLKAGLAQLLQNSKDLQ 377
           ++L  L GEL I ++ L+ L        L  LK  + +L Q+S +L+
Sbjct: 343 EDLSELFGELNIERNGLS-LQLKRMRQLLQTLKTKVRRLEQSSFELR 388