Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 695 a.a., putative CheA signal transduction histidine kinase (RefSeq) from Shewanella amazonensis SB2B

 Score =  587 bits (1513), Expect = e-172
 Identities = 330/709 (46%), Positives = 464/709 (65%), Gaps = 33/709 (4%)

Query: 1   MALDMEQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLH 60
           M +D+ Q  ++F  E  E L  +E ELL+LD +  D E +NTIFRAAHSIKGG+ TF   
Sbjct: 1   MDIDLSQFSQVFFEESIEGLAIMESELLKLDVAAPDPETINTIFRAAHSIKGGSATFGFM 60

Query: 61  EISEFTHAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVG 120
           +++ +TH +ET LD IR+ ++Q+    VD LL S D++R M ++   +   ++    ++ 
Sbjct: 61  QVANYTHLLETLLDEIRDGRRQMQPDHVDMLLLSVDLLRGMFEALMSQAEFNDPKLPELE 120

Query: 121 AELQALLADQGADRVMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVPHETLFYSG 180
             L   LA+Q      SQ Q +S           A    D+    W+I F     +   G
Sbjct: 121 LRLNNTLANQP-----SQTQSISP--------PQATMASDSKTLCWQIDFKAGADIMRCG 167

Query: 181 NDPLRILRELRELGSEYQIELDHQALPELAEIDPELCYLSWTIRLTGDVSENDVRELFDW 240
           NDP+ +  EL   G+    EL   + P   + DPE CYL W +RL  D     ++E+F+W
Sbjct: 168 NDPMLMFAELASKGT-LTAELLPVSFPAWDDFDPEACYLHWRLRLITDEPLEKLKEVFEW 226

Query: 241 VEDECDLHIAPILSDEASAHVEDEQAAPAATLQSNPQTQVEP-VAIVDLPAVEPPVATVA 299
           VEDEC++      +   SA    E  +P+      PQ++V+P VA  D+ A+ P V  +A
Sbjct: 227 VEDECEISYQQTAA-APSADTSTEMLSPS------PQSEVDPPVAAPDVIALTPQVQALA 279

Query: 300 P--VIANPKESATNKPAKTDSSVSSIRVDIEKVDNLINLVGELVITQSMLTELG--NDFS 355
               +A+ K+SA    AK+  S SSIRV  EK+D LIN+VGELVITQ+ML ++G  ++ +
Sbjct: 280 TDKAVASQKQSAA--AAKSGES-SSIRVSTEKIDMLINMVGELVITQAMLGQIGQQDEIN 336

Query: 356 MDKLDKLKAGLAQLLQNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQ 415
            + L  L+ GL QL  +++DLQE+V+ IRMLP+SFAF+RFPRLVRD+  +LGKKV+L ++
Sbjct: 337 QESLLLLQQGLEQLASHTRDLQESVMQIRMLPISFAFNRFPRLVRDIGQQLGKKVELILK 396

Query: 416 GEQTELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIV 475
           GE TELDKTVLE+IVDP+VHLVRN +DHG+E P+ RLA+GK ETG I L A+HQGG II+
Sbjct: 397 GEDTELDKTVLEKIVDPMVHLVRNSLDHGLESPEARLAQGKSETGTIMLNAYHQGGCIII 456

Query: 476 EISDDGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRG 535
           EI+DDGAG++  K+  KA +KG++  +    +L+++ I  LIF PGFSTA+ VSD+SGRG
Sbjct: 457 EIADDGAGLNTHKILEKARQKGLVGAE---EELSEEAIHQLIFRPGFSTADAVSDLSGRG 513

Query: 536 VGMDVVRRNIEELGGQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIV 595
           VGMDVV+RNI EL G IE+ SE G+GSRFTI LPLTLAILDGQL+++   +YV+PL++I 
Sbjct: 514 VGMDVVKRNIHELNGSIELKSEAGKGSRFTIRLPLTLAILDGQLIRIGKHIYVVPLVSIY 573

Query: 596 ESIQINTASVKHAAGGIELYRLREENIPILRLQDELAMGRSG-SLEKRLICFVESAGHRV 654
           ES+Q+ T  +   + G EL RLR+E +P++++  E         ++  L+  V+    + 
Sbjct: 574 ESLQVPTNRINRLSDGHELIRLRDEYLPVIKMYREFNHDADAREIKDGLVMVVDHNNEKA 633

Query: 655 GLLVDDLLDQQQVVIKSLESNYAKVAGISGATILGDGSVSLILDIPGLI 703
           GLLVD+LL QQQVVIKSLE NY ++ GISGATILGDG+V+LI+D+ GL+
Sbjct: 634 GLLVDELLAQQQVVIKSLEENYTRIPGISGATILGDGTVALIIDVAGLV 682