Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 759 a.a., putative CheA signal transduction histidine kinase (RefSeq) from Shewanella amazonensis SB2B

 Score =  365 bits (938), Expect = e-105
 Identities = 250/765 (32%), Positives = 399/765 (52%), Gaps = 63/765 (8%)

Query: 1   MALDM-EQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNL 59
           M+ D+ E++ + F +E  E LE L+ +L+ L+ +  D ++LN IFR  H++KGGAG   L
Sbjct: 1   MSFDVDEEILQDFLIEAGEILELLQEQLVALENNPEDTDLLNAIFRGFHTVKGGAGFLGL 60

Query: 60  HEISEFTHAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSRE----QETAIDEAL 115
             + +  H  E   DL+R  K+ +TA+ +D +L++ D I  M    +    QE A  E L
Sbjct: 61  APMVDVCHESENTFDLLRTGKRHVTAELMDIILQAVDAINTMFAQTQAGQAQEPASAELL 120

Query: 116 KQQVGAELQALLADQGADRVMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVPHET 175
            +       A L  +G +   S +   + N        +     +  A    +   P  T
Sbjct: 121 DKLKLLSSGAPLPSEGGEASSSSSSEPTINVDNEIPGVELFGDLEEPAAAEPVTQAPAMT 180

Query: 176 LFYSGNDPLR--ILRELRELGSEYQIELDHQA-----LPELAEIDPELCYLSWTIRLTGD 228
             +  + P     + E+ E   E  ++  H +     +   +   P     +      GD
Sbjct: 181 DDFLFDSPASDSSIDEINEAEFEALLDALHGSGKGPGVTGTSGAAPSADKAAAKAAPAGD 240

Query: 229 -VSENDVRELFDWVEDE------CDLHIAPILSDEASAHVEDEQ---------------- 265
            +++++   L D +          D  +A +  D  + HV+ ++                
Sbjct: 241 EITDDEFEALLDELHGSGKFKATTDKVVAKV-EDSPADHVDTDEITDDEFEKLLDELHGK 299

Query: 266 ---------AAPAATLQSNPQTQVEPVAIVDLPAVEP--PVATVAPVIANPKESATNKPA 314
                    A PAA   S P++   P A    P  +P  PV    PV+A  K  A    A
Sbjct: 300 GTGPGVVSAAKPAAPATSQPKSAAAP-AESPKPVAKPSSPVEAPKPVVAAEKSPAPVAKA 358

Query: 315 KTDSSVS------SIRVDIEKVDNLINLVGELVITQSMLTELGNDFSMDKLDKLKAGLAQ 368
              +  S      ++RVD  ++D ++N+VGELV+ ++ L  LG     +++ K    LA 
Sbjct: 359 APAAGASVPQGETTVRVDTARLDQIMNMVGELVLVRNRLVSLGVTREDEEMSK---ALAN 415

Query: 369 LLQNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELDKTVLER 428
           L   + DLQ  V+  RM P+   F RFPR+VRDL   L K++DL + GE+T+LDK ++E 
Sbjct: 416 LDLVTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARSLNKEIDLVLVGEETDLDKNLVEA 475

Query: 429 IVDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDDGAGIDCDK 488
           + DPLVHLVRN +DHG+EMP  R+A GKP+TG ITL A  +G  I+++I DDGAG+D +K
Sbjct: 476 LADPLVHLVRNSVDHGIEMPADRVASGKPKTGTITLSASQEGDHILLKIEDDGAGMDPEK 535

Query: 489 LWRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDVVRRNIEEL 548
           L   AV++GVL+ +   + ++D +  NLIFAPGFST  ++SDISGRGVGMDVV+  I +L
Sbjct: 536 LKAIAVKRGVLD-EDAAARMSDHEAYNLIFAPGFSTKTEISDISGRGVGMDVVKTRITQL 594

Query: 549 GGQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESIQINTASVKHA 608
            G + +DS  G+G+   I +PLTLAI+   +V+VA QV+ +PL ++ E   ++       
Sbjct: 595 NGTVHIDSVKGKGTILEIKVPLTLAIMPTLMVEVAKQVFALPLSSVNEIFHLDLTKTNIV 654

Query: 609 AGGIELYRLREENIPILRLQDELAMGRS----GSLEKRLICFVESAGHRVGLLVDDLLDQ 664
            G + +   R++ +P+  L+  L+  ++    G  +   +  V+    ++G +VD L+ Q
Sbjct: 655 DGQLTVI-FRDKAVPLFYLEQWLSRSKTKFKHGDKKHGHVVIVQLGTMQIGFVVDALIGQ 713

Query: 665 QQVVIKSLESNYAKVAGISGATILGDGSVSLILDIPGLIAHFMKR 709
           ++VVIK L +      G++GATI  DG ++LILD+PGL+ H+ KR
Sbjct: 714 EEVVIKPLGALLHGTPGMAGATITSDGGIALILDVPGLLKHYAKR 758