Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 862 a.a., CheA Signal Transduction Histidine Kinases (STHK) (NCBI) from Rhodospirillum rubrum S1H

 Score =  261 bits (668), Expect = 8e-74
 Identities = 144/390 (36%), Positives = 237/390 (60%), Gaps = 12/390 (3%)

Query: 323 IRVDIEKVDNLINLVGELVITQSMLTELGNDF-----SMDKLDKLKAGLAQLLQNSKDLQ 377
           ++VD  K+D L+ L+GELV++++ L  L         S +   ++K   A + + ++++Q
Sbjct: 474 LKVDQAKIDTLMALIGELVVSKNSLPFLARRAEEVHGSREMGREIKDTFAVVDRLAQEMQ 533

Query: 378 ENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELDKTVLERIVDPLVHLV 437
             ++ +RMLP+S  F RFPRLVRD+  +LGK +DL I+GE T  DKT++E + DPL+H++
Sbjct: 534 AAIMAVRMLPVSEVFERFPRLVRDIARKLGKHIDLVIEGEDTAADKTIVEMLGDPLLHII 593

Query: 438 RNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDDGAGIDCDKLWRKAVEKG 497
           RN +DHG+E P+ R A GKP T  + +KAFH    +++E+SDDG GID  K+   AV KG
Sbjct: 594 RNSLDHGIESPEEREAAGKPPTARVLVKAFHDSDQVVIEVSDDGRGIDPVKIRAAAVAKG 653

Query: 498 VLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDVVRRNIEELGGQIEVDSE 557
           V+E + + + L+D++ +NL+F PGFSTA QVSD+SGRGVGMDVV   +++  G + + S 
Sbjct: 654 VIEAE-RAARLSDQEAVNLVFLPGFSTAGQVSDLSGRGVGMDVVVSTMDKANGVVSLSST 712

Query: 558 LGRGSRFTISLPLTLAILDGQLVKV-ADQVYVIPLLTIVESIQINTASVKHAAGGIELYR 616
            G G+   +SLPL++A+    +V+     ++ IP+  I ++++I   +V+      E + 
Sbjct: 713 PGLGTTVRLSLPLSMAVTRVMMVEAGGGMLFGIPMDHIAQTVRIPRKAVRRIKQS-EAFV 771

Query: 617 LREENIPILRLQDELAMGR----SGSLEKRLICFVESAGHRVGLLVDDLLDQQQVVIKSL 672
           LR+  +P++RL   L +          ++  +  V       GL+VD   +   +++K  
Sbjct: 772 LRDAIVPLVRLDTLLGLAPPVWFGDESQEDAVLVVRVGNALTGLVVDHFREGMDIILKPF 831

Query: 673 ESNYAKVAGISGATILGDGSVSLILDIPGL 702
           +   A + G SG  +LGDG V L+L++  L
Sbjct: 832 DGILAGLPGYSGTALLGDGRVLLVLNLKEL 861



 Score = 82.4 bits (202), Expect = 9e-20
 Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 16/251 (6%)

Query: 12  FHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFTHAVET 71
           F  E R+ L+T    LL L+ +  D   LN +FR+ H++KG  G F+    ++  HA E 
Sbjct: 9   FLSEARDLLQTAASGLLALEKTPGDDAALNEVFRSVHTLKGSVGLFDYPAFTKLVHAGED 68

Query: 72  YLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAID---EALKQQVGAELQALLA 128
            L  +R  +  LT++ VD LL + D +   +D+ E+   +    E L   +   L+A L 
Sbjct: 69  VLSAVRAGQVALTSELVDLLLDTLDQVGAWVDAIERSGLLPDGAEGLSLALTTSLRATLP 128

Query: 129 DQGADRVMSQAQPVSSNTHTSNM----HADAIAIPDATAQG---WRIRFVPHETLFYSGN 181
            +      S  +P  +     ++     AD +A   A   G     + + P E  F+SG 
Sbjct: 129 REHGAEPTSAPEPTEAPVSIDHLALLPEADRLAAFRAALCGAPLLSLDYAPAEDCFFSGE 188

Query: 182 DPLRILRELRELGSEYQIELDHQALPELAE-IDPELCYLSWTIRLTGDVSENDVRELFDW 240
           DP+ + R++ +L   + + ++ +   +  E +DP  C L   +R     ++  + +LF +
Sbjct: 189 DPVNLFRQIPDL---FSLVIEPRTPWQSVETVDPYCCLL--RLRALCGGNKTAIEQLFRY 243

Query: 241 VEDECDLHIAP 251
           V ++  +H  P
Sbjct: 244 VIEQVTVHTVP 254