Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 693 a.a., CheA Signal Transduction Histidine Kinases (STHK) (NCBI) from Rhodospirillum rubrum S1H

 Score =  388 bits (996), Expect = e-112
 Identities = 256/705 (36%), Positives = 384/705 (54%), Gaps = 48/705 (6%)

Query: 12  FHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFTHAVET 71
           F  E +E LE LE  LL L+ +  D +++++ FRA H+IKG    F    ++ FTH VET
Sbjct: 10  FRQEAQELLEQLEQALLDLEHAPDDGDLIDSAFRALHTIKGSGSMFGFDAVAAFTHHVET 69

Query: 72  YLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQ-ETAIDEALKQQVGAELQAL---L 127
             DL+R  K   + + +   L + D +R +++  E  E+A  +A+ + + A + A     
Sbjct: 70  AFDLVRKGKVTPSRELIAVALAAKDRMRLLIEQPETPESAEGDAILRDLKAIVDASDLPS 129

Query: 128 ADQGADR-VMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVPHETLFYSGNDPLRI 186
           A +G D  V ++ QP                        WRIRF         G +PL +
Sbjct: 130 AGEGGDAPVAAREQPAEIT--------------------WRIRFRLARDAMAMGTNPLLL 169

Query: 187 LRELRELGSEYQIELDHQALPELAEIDPELCYLSWTIRLTGDVSENDVRELFDWVEDECD 246
           L ELR LGS   + L  + +P L  + P  C+L+W + LT       + ++F +V D+ +
Sbjct: 170 LDELRTLGSATIVALTGE-VPSLEVLVPSDCHLAWDVMLTTSQPRTAIEDVFMFVIDDME 228

Query: 247 LHIAPILSDEASAHVEDEQAAPAATLQSNPQTQVEP-----VAIVDLPAVEPPVATVAPV 301
           L I  + S E    + +         Q    T V         +V+   + P   T A  
Sbjct: 229 LSIDLLESGEEDRRIGEILVERGDVAQEAVDTAVSRQLPLGTLLVESGNLSPDKLTSALA 288

Query: 302 IANPKESATNKPAKTDSSVSSIRVDIEKVDNLINLVGELVITQSMLTELG---NDFSMDK 358
                 + T   AK      SIRV  E++D L++ VGELVI QS LT++    ND     
Sbjct: 289 EQQHLRTETKVVAK---GADSIRVPAERLDELMDRVGELVIAQSRLTQVAASINDM---- 341

Query: 359 LDKLKAGLAQLLQNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQ 418
             ++KA   ++ + + +L++  + +RM+P+S  F RF RLV DL   LGK+++L   GE+
Sbjct: 342 --QVKAIAEEIERLAHELRDTTMGVRMVPISSLFGRFRRLVHDLAHDLGKQIELTTFGEE 399

Query: 419 TELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEIS 478
           TELDKTV+ER+ DPL+HL+RN IDHG+E P+ R   GKP  G ITL A H G  ++V I 
Sbjct: 400 TELDKTVIERLNDPLIHLIRNSIDHGLETPEGRKEAGKPPAGRITLSARHSGAEVLVSII 459

Query: 479 DDGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGM 538
           DDG G+D  ++  +A E+G+L P  +   L+D  +  +IF  GFSTA+ V+ +SGRGVGM
Sbjct: 460 DDGRGLDRARIQARAEEQGLLAPGVK---LSDNDLFQVIFQAGFSTAKVVTSLSGRGVGM 516

Query: 539 DVVRRNIEELGGQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESI 598
           DVV+R IE L G+I++ S  G+G+  T+ LPLTLAI+DG LV+V    YV+PL  + E +
Sbjct: 517 DVVKRTIEGLRGKIDIASTPGKGTELTLRLPLTLAIIDGLLVRVGKARYVLPLSAVEECV 576

Query: 599 QINTASVKHAAGGIELYRLREENIPILRLQDELAMGRSGSLEKRLICFVESAGHRVGLLV 658
           ++ +A     + G     +R + +P LRL++   +       ++++  V S   RVGL+V
Sbjct: 577 EL-SAEEDGRSRGRSFLNIRGDLVPFLRLRELFQVSAPADPYQKVV-IVSSGEFRVGLVV 634

Query: 659 DDLLDQQQVVIKSLESNYAKVAGISGATILGDGSVSLILDIPGLI 703
           D ++   Q VIKSL   +A V   SGATILGDG+V+LILDI  L+
Sbjct: 635 DQVIGNHQTVIKSLSKLHADVETFSGATILGDGAVALILDIGHLV 679