Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 942 a.a., CheA Signal Transduction Histidine Kinases (STHK) (NCBI) from Rhodospirillum rubrum S1H

 Score =  308 bits (788), Expect = 1e-87
 Identities = 189/491 (38%), Positives = 291/491 (59%), Gaps = 29/491 (5%)

Query: 246 DLHIAPILSDEASAHVEDEQAAPAATLQSNPQTQVEPVAIVDLPAVEPPVATVAPVIANP 305
           +  +A  L+ E +A  + EQA  A   +  P+  V+    V  PA +PP  T A     P
Sbjct: 175 EAELAAELAAELAAAEKAEQAVAAPVPEVIPE--VKAATPVVQPA-KPPAVTAAHDTNGP 231

Query: 306 KESATNKPAKTDSSVSSIRVDIEKVDNLINLVGELVITQSMLTEL--GNDFSMDKLDKLK 363
                 +  +   +  SIRV++E ++NL+ LV ELV+T++ L ++  G+D S     +  
Sbjct: 232 NGGGGGEQKEGSVASQSIRVNVELLENLMTLVSELVLTRNQLLQMVRGSDDS-----EFV 286

Query: 364 AGLAQLLQNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELDK 423
           A L +L   + DLQE V+  RM P+  A+++ PR+VRDL   + KK+DLQ+ G  TELD+
Sbjct: 287 APLQRLSHITTDLQEGVMKTRMQPIGNAWAKLPRIVRDLSIEMHKKIDLQMYGADTELDR 346

Query: 424 TVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDDGAG 483
            VLE I DPL H+VRN  DHG+E PD R A GKPETGVI L A+H+GG II+EISDDG G
Sbjct: 347 QVLEMIKDPLTHMVRNSGDHGLEFPDERAAAGKPETGVIKLNAYHEGGHIIIEISDDGRG 406

Query: 484 IDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDVVRR 543
           ++ +++  KA+  G L  + +  ++TD+QI   IF  G STAE+V+ +SGRGVGMDVV+ 
Sbjct: 407 LNLERIRAKALSNG-LATEAELENMTDQQIAQYIFRAGLSTAEKVTAVSGRGVGMDVVKT 465

Query: 544 NIEELGGQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESIQI--N 601
           NIE++GG +E+ +  G+GSRF I +PLTLAI+   +V+ + + + IP ++++E +++  N
Sbjct: 466 NIEKIGGTVELKTWPGKGSRFVIKIPLTLAIVSALIVEASGERFAIPQISVLELVRVTAN 525

Query: 602 TASVKHAAGGIELYRLREENIP------ILRLQD-------ELAMGRSGSLEKRLICFVE 648
           + +         + RLR+  +P      +LRL D       + A   +G  ++  I   +
Sbjct: 526 SETTIEQINTAPVLRLRDRLMPLVSLSALLRLDDGDDEELGKTADATAGRRDETFIVVSQ 585

Query: 649 SAGHRVGLLVDDLLDQQQVVIKSLESNYAKVAGISGATILGDGSVSLILDIPGLIA---H 705
              +  G++VD + D +++V+K +      V+  SG TILGDGSV +ILD  G+ +    
Sbjct: 586 VGTYTFGIIVDRVFDTEEIVVKPVAPILRHVSMFSGNTILGDGSVIMILDPNGIASATGE 645

Query: 706 FMKRSSSSTTK 716
               S+S TT+
Sbjct: 646 VTMGSASGTTE 656



 Score = 59.3 bits (142), Expect = 9e-13
 Identities = 37/121 (30%), Positives = 57/121 (47%)

Query: 5   MEQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISE 64
           M+ L   F  E  E++ TL+ EL+ L+ +  D  +L+ IFR  H+IKG  G   L  +  
Sbjct: 1   MDDLLSEFLTETSESIATLDVELVNLERNPNDKGILSNIFRLVHTIKGTCGFLGLPRLES 60

Query: 65  FTHAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVGAELQ 124
             HA E  L   R+   ++T   V  +L + D I+ +L   E      E   + + A L 
Sbjct: 61  LAHAGENVLGKFRDGDLEVTPAAVTVILHTIDRIKEILGHLEANEVEPEGDDKDLKAHLN 120

Query: 125 A 125
           A
Sbjct: 121 A 121