Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 746 a.a., CheA signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  322 bits (825), Expect = 4e-92
 Identities = 187/457 (40%), Positives = 277/457 (60%), Gaps = 14/457 (3%)

Query: 256 EASAHVEDEQAAPAATLQSNPQTQVEPVAIVDLPAVEPPVATVAPVIANPKESATNKPAK 315
           E S  V     APAA   +   T   P ++   P   P    V    A  K  ATN P  
Sbjct: 297 ETSKPVASAAKAPAAPAPNKVATPA-PSSVKSQPVEVPAPKPVVKEKAAAKAPATNMP-- 353

Query: 316 TDSSVSSIRVDIEKVDNLINLVGELVITQSMLTELGNDFSMDKLDKLKAGLAQLLQNSKD 375
              + +++RVD  ++D ++N+VGELV+ ++ L  LG   S D  D  KA LA L   + D
Sbjct: 354 --QAETTVRVDTARLDQIMNMVGELVLVRNRLLSLG--ISRDDEDMSKA-LANLDLVTAD 408

Query: 376 LQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELDKTVLERIVDPLVH 435
           LQ  V+  RM P+   F RFPR+VRDL   L K++DL++ GE T+LDK ++E + DPLVH
Sbjct: 409 LQGAVMKTRMQPIKKVFGRFPRVVRDLARSLNKEIDLRMIGEDTDLDKNLVEALADPLVH 468

Query: 436 LVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDDGAGIDCDKLWRKAVE 495
           LVRN +DHG+EMPD R A GK  TG ITL A  +G  I+++I DDGAG+D +KL + A++
Sbjct: 469 LVRNSVDHGIEMPDEREANGKSRTGTITLSASQEGDHILLKIEDDGAGMDPEKLKQIAIK 528

Query: 496 KGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDVVRRNIEELGGQIEVD 555
           +GVL+ +   + ++D++  NLIFAPGFST  ++SDISGRGVGMDVV+  I +L G + +D
Sbjct: 529 RGVLD-EDAAARMSDEEAYNLIFAPGFSTKVEISDISGRGVGMDVVKTRITQLNGTVHID 587

Query: 556 SELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESIQINTASVKHAAGGIELY 615
           S  G+G+   I +PLTLAI+   +V+VA QV+ +PL ++ E   ++        G + + 
Sbjct: 588 SLKGKGTCLEIKVPLTLAIMPTLMVEVAQQVFALPLSSVSEIFHLDLTKTNVVDGQLTVI 647

Query: 616 RLREENIPILRLQDELAMG----RSGSLEKRLICFVESAGHRVGLLVDDLLDQQQVVIKS 671
            +RE+ +P+  L+  L+      + G  +   +  V+    ++G +VD L+ Q++VVIK 
Sbjct: 648 -VREKAVPLFYLEHWLSRKAVSFKHGDKQHGHVVIVQLGTMQIGFVVDSLIGQEEVVIKP 706

Query: 672 LESNYAKVAGISGATILGDGSVSLILDIPGLIAHFMK 708
           L +      G++GATI  DG ++LILD+PGL+ H+ K
Sbjct: 707 LGTLLHGTPGMAGATITSDGGIALILDVPGLLKHYAK 743



 Score = 71.6 bits (174), Expect = 1e-16
 Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 4/119 (3%)

Query: 1   MALDM-EQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNL 59
           M+ D+ E++ + F +E  E LE L  +L+ L+ +  D E+LN IFR  H++KGGAG  +L
Sbjct: 1   MSFDVDEEILQDFLIEAGEILELLSEQLVALENNPDDTELLNAIFRGFHTVKGGAGFLSL 60

Query: 60  HEISEFTHAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSRE---QETAIDEAL 115
             + +  H  E   DL+R  K+ ++A+ +D +L++ D I +M    +   +++  DE L
Sbjct: 61  TPMVDVCHEAENTFDLLRTGKRSVSAELMDIILQAVDTINSMFAETQAGVEQSPADEGL 119