Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 686 a.a., CheA signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  595 bits (1533), Expect = e-174
 Identities = 331/711 (46%), Positives = 461/711 (64%), Gaps = 44/711 (6%)

Query: 1   MALDMEQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLH 60
           M +D+ Q  ++F  E  E LE++E ELL+LD +  D E +NTIFRAAHSIKGG+GTF  +
Sbjct: 1   MEIDLSQFSQVFFEESLEGLESMESELLKLDIAAPDPEAINTIFRAAHSIKGGSGTFGFN 60

Query: 61  EISEFTHAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVG 120
           +++ +TH +ET LD IR+ ++++T+   D LL S D++RNMLD+   +   D+ +   + 
Sbjct: 61  QVANYTHLLETLLDEIRDGRREMTSHHQDILLLSVDLLRNMLDAVMHQQTFDDPMLSDLE 120

Query: 121 AELQALLADQGADRVMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVPHETLFYSG 180
            +  A L+   +    +Q +P +               P+ T   W+I F     +   G
Sbjct: 121 QKFAAELSQGESQEDETQREPET---------------PEQTT--WQISFKAGTDILRYG 163

Query: 181 NDPLRILRELRELGSEYQIELDHQALPELAEIDPELCYLSWTIRLTGDVSENDVRELFDW 240
           NDPL +  EL + G E  +EL  Q +P+  + DPE CYL+W++ LT D   + ++E F+W
Sbjct: 164 NDPLLMFNELGQCG-ELSVELLPQEIPDFTQYDPEACYLAWSLTLTTDQPLSRLKEAFEW 222

Query: 241 VEDECDLHIAPILSDEASAHVEDEQAAPAATLQSNPQTQVEPVAIVDLPAVEPPVATVAP 300
           VEDECD+               D QA P A+  S   T+ E  A  +   ++    T  P
Sbjct: 223 VEDECDI---------------DYQAQPKASEASEITTEKEIEATAESD-IQASTQTTTP 266

Query: 301 VIANPKESATNKPAKTDSS----VSSIRVDIEKVDNLINLVGELVITQSMLTELGNDFSM 356
               P++ A+       SS      SIRV IEK+D LIN+VGELVITQ+ML ++G    M
Sbjct: 267 ASVQPEKPASQTRPSVVSSKTQDAGSIRVSIEKIDLLINMVGELVITQAMLGQIGQQEEM 326

Query: 357 --DKLDKLKAGLAQLLQNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQI 414
             +    +K GL QL  +++DLQE+V+ IRMLP+SFAF+RFPRLVRD+  +LGKKV+L +
Sbjct: 327 TPESFITMKQGLEQLASHTRDLQESVMQIRMLPISFAFNRFPRLVRDIGQQLGKKVELIL 386

Query: 415 QGEQTELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSII 474
           +GE TELDKTV+E+IVDP+VHLVRN +DHG+E P+VR  KGKPETG +TL AFHQGG+II
Sbjct: 387 KGEDTELDKTVMEKIVDPMVHLVRNSLDHGLETPEVRRQKGKPETGTLTLNAFHQGGNII 446

Query: 475 VEISDDGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGR 534
           +EI DDGAG++  K+  KA  KG++       +L+++ I  LIF PGFSTAE VSD+SGR
Sbjct: 447 IEIIDDGAGLNTQKILDKARAKGLVGSD---EELSEEAIHQLIFKPGFSTAETVSDLSGR 503

Query: 535 GVGMDVVRRNIEELGGQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTI 594
           GVGMDVV RNI EL G IE+ S   +GSRFTI LPLTLAILDGQLV++    YV+PL+ I
Sbjct: 504 GVGMDVVLRNIHELNGTIELKSTQDKGSRFTIRLPLTLAILDGQLVRIGTHTYVVPLVAI 563

Query: 595 VESIQINTASVKHAAGGIELYRLREENIPILRLQDEL-AMGRSGSLEKRLICFVESAGHR 653
            ES+++  A +   +   E+ RLR+E +P+L++ +       +  ++  L+  V++   +
Sbjct: 564 HESLEVPAAHINRLSEEHEVIRLRDEYLPVLKVYEAFHHEADAKQIKDGLVMVVDANNDK 623

Query: 654 VGLLVDDLLDQQQVVIKSLESNYAKVAGISGATILGDGSVSLILDIPGLIA 704
           VGLLVD+LL QQQVVIKSLE NY+KVAGISGATILGDG+V+LI+DI GL++
Sbjct: 624 VGLLVDELLSQQQVVIKSLEDNYSKVAGISGATILGDGTVALIIDIAGLVS 674