Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 2039 a.a., chemotaxis protein histidine kinase-like protein from Dechlorosoma suillum PS

 Score =  233 bits (594), Expect = 7e-65
 Identities = 138/369 (37%), Positives = 216/369 (58%), Gaps = 16/369 (4%)

Query: 346  MLTELGNDFS------MDKLDKLKAGLAQLLQNSKDLQENVLNIRMLPMSFAFSRFPRLV 399
            M+ E  ND +      +  LD+  A +    + +++LQ++++++RM+P S    R  R+V
Sbjct: 1525 MMAESVNDVATVQQNLLKNLDEANAAIIAQARLNRELQQSLMSVRMVPFSSQTERLHRIV 1584

Query: 400  RDLCGRLGKKVDLQIQGEQTELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKPET 459
            R     +GK+ +L+I G Q ELD+ VL+++V PL H++RN + HG+E  + RLA GK E 
Sbjct: 1585 RQTAKEVGKRANLEIVGGQVELDRGVLDKMVAPLEHMLRNSVAHGLESREGRLAAGKEEI 1644

Query: 460  GVITLKAFHQGGSIIVEISDDGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLIFA 519
            G I LK   +G  II+ ++DDGAG+D  ++  KA  +G+L       +  D ++ +LIFA
Sbjct: 1645 GEIELKVAQEGNEIIITMADDGAGLDLQRIRAKAESQGLL---AAGEEADDARLADLIFA 1701

Query: 520  PGFSTAEQVSDISGRGVGMDVVRRNIEELGGQIEVDSELGRGSRFTISLPLTLAILDGQL 579
            PGFSTA +VS I+GRGVGMDVVR  +  LGG++E+ S  G+G  F I LPLTLA+    +
Sbjct: 1702 PGFSTAGEVSQIAGRGVGMDVVRTEVTNLGGRLEMQSVAGKGLTFRIYLPLTLAVTQALI 1761

Query: 580  VKVADQVYVIP--LLTIVESIQINTASVKHAAGGIELYRLREENIPILRLQDELAMGRSG 637
            V+V ++ Y IP  ++  V+ ++    +     G +E    R    P   L   L   ++ 
Sbjct: 1762 VRVGNRRYAIPSAMIAQVQEVKEQVLAGIRETGQVEWLGNR---YPYHFLPHLLGEPQAL 1818

Query: 638  SLEKRL--ICFVESAGHRVGLLVDDLLDQQQVVIKSLESNYAKVAGISGATILGDGSVSL 695
               +RL  +  + S   R  + VD+L   Q++V+K++    A+V GI+GAT+LGDG V L
Sbjct: 1819 PEARRLSWVLLLRSGTQRAAIQVDELFGNQEIVVKNVGPQLARVIGIAGATVLGDGQVLL 1878

Query: 696  ILDIPGLIA 704
            IL+   L A
Sbjct: 1879 ILNPVALAA 1887



 Score = 46.2 bits (108), Expect = 2e-08
 Identities = 103/422 (24%), Positives = 164/422 (38%), Gaps = 87/422 (20%)

Query: 8    LRKIFHVECRENLETLEGE--LLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEF 65
            L +IF  E + +LE L+ +  LL+ DP     E      RAAH++   AGT  L  I+  
Sbjct: 1101 LYQIFMEEAQGHLEALQRQFGLLETDPEMPTAEPFT---RAAHTLGSIAGTIGLDAINRL 1157

Query: 66   THAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVGAELQA 125
              A+E  L L R+Q     +      L++ ++IR  + S E+  A   ++  Q   E  +
Sbjct: 1158 GRALEHAL-LRRDQSAHPAS------LEALEIIRLAISSLEEMVA---SVAAQQPPEPAS 1207

Query: 126  LLADQGADRVMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVPHETLFYSGNDPLR 185
             LAD      +    P + N +       A+    A A        P +         L 
Sbjct: 1208 HLAD-----ALDTLFPAALNDNGDGNEVPAVVSAGAPAAAPAAPPAPVQLKDDLDEQLLP 1262

Query: 186  I-LRELRELGSEY--QIELDHQALPELAEIDPELCYLSWTI----RLTGDVSENDVRE-- 236
            I L E +EL      Q+ L H   P  A++   L  L  T+    R+ G ++  ++    
Sbjct: 1263 IFLEEAQELTQSITEQLRLWHDD-PHDADVARALARLLHTLKGSARMAGAMNLGELTHTL 1321

Query: 237  ----------------LFDWVEDECDLHIAPILSDEASAHVEDE----------QAAPAA 270
                            L + ++   D  IA I+   AS    D           + A A 
Sbjct: 1322 ETRVEQAHKAGAAEAALIEEIQIAFDA-IAQIVERLASGDTLDTPLPVELLALPETAEAD 1380

Query: 271  TLQSNPQTQVEP--------VAIVDLPAVEPPVATVAPVIANPKESATNKPAKTDSSVSS 322
               + P+TQ  P        VA  + PA E P ATV    A P+  A        +S ++
Sbjct: 1381 LAPAMPETQAAPASAEMPAAVAQPERPAAEAP-ATVQVAAAEPEVDAAA------ASRAT 1433

Query: 323  IRVDIEKVDNLINLVGELVITQSMLTELGNDFSMDKLDKLKAGLAQLLQNSKDLQENVLN 382
            +RV  + +D L+N  GEL I ++               +++  +  L  +  DL ENV+ 
Sbjct: 1434 LRVRSDLMDRLVNEAGELSIARA---------------RIEGEMRSLKDSLLDLTENVIR 1478

Query: 383  IR 384
            +R
Sbjct: 1479 LR 1480



 Score = 41.6 bits (96), Expect = 4e-07
 Identities = 74/381 (19%), Positives = 144/381 (37%), Gaps = 26/381 (6%)

Query: 6    EQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEF 65
            EQL  IF  E +E  +++  +L        D +V   + R  H++KG A       + E 
Sbjct: 1258 EQLLPIFLEEAQELTQSITEQLRLWHDDPHDADVARALARLLHTLKGSARMAGAMNLGEL 1317

Query: 66   THAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVGAELQA 125
            TH +ET ++   ++     A  ++ +  + D I  +++       +D  L  ++ A  + 
Sbjct: 1318 THTLETRVEQ-AHKAGAAEAALIEEIQIAFDAIAQIVERLASGDTLDTPLPVELLALPET 1376

Query: 126  LLADQGADRVMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVPHETLFYSGNDPLR 185
              AD       +QA P S+             +P A AQ  R       T+  +  +P  
Sbjct: 1377 AEADLAPAMPETQAAPASAE------------MPAAVAQPERPAAEAPATVQVAAAEPEV 1424

Query: 186  ILRELRELGSEYQIELDHQALPELAEIDPELCYLSWTIRLTG----DVSENDV--RELFD 239
                        + +L  + + E  E+      +   +R       D++EN +  R    
Sbjct: 1425 DAAAASRATLRVRSDLMDRLVNEAGELSIARARIEGEMRSLKDSLLDLTENVIRLRRQLR 1484

Query: 240  WVEDECDLHIAPILSDEASAH-----VEDEQAAPAATLQSNPQTQVEPVAIVDLPAVEPP 294
             VE + +  I    ++   AH     +E ++      L       V  VA V    ++  
Sbjct: 1485 EVEIQAETQIQARTAEAEVAHAGFDPLEFDRFTRFQELTRMMAESVNDVATVQQNLLKNL 1544

Query: 295  VATVAPVIANPKESATNKPAKTDSSVSSIRVDIEKVDNLINLVGELVITQSMLTELGNDF 354
                A +IA  + +   + +     +       E++  ++    + V  ++ L  +G   
Sbjct: 1545 DEANAAIIAQARLNRELQQSLMSVRMVPFSSQTERLHRIVRQTAKEVGKRANLEIVGGQV 1604

Query: 355  SMDK--LDKLKAGLAQLLQNS 373
             +D+  LDK+ A L  +L+NS
Sbjct: 1605 ELDRGVLDKMVAPLEHMLRNS 1625



 Score = 35.8 bits (81), Expect = 2e-05
 Identities = 22/80 (27%), Positives = 40/80 (50%)

Query: 7   QLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFT 66
           +L  IF  E +E L T+   +  L     +++ L TI R+ H++KG      L ++ E  
Sbjct: 692 ELLSIFLEEAQEVLGTIGSHIGLLREQPHNVDFLTTIRRSFHTLKGSGRMVGLKDLGETA 751

Query: 67  HAVETYLDLIRNQKKQLTAQ 86
            A+E  L+L   Q+  ++ +
Sbjct: 752 WAIEQVLNLWLRQEYDVSPE 771



 Score = 33.9 bits (76), Expect = 8e-05
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 48  HSIKGGAGTFNLHEISEFTHAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLD 103
           H + G      L  +++FT A+E +L  + + K+      VD + +S   IR+ LD
Sbjct: 52  HQVHGALAIVGLDGVTQFTEALEAFLADLESGKRPADDAAVDLVRRSLQAIRHYLD 107