Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

 Score =  317 bits (813), Expect = 1e-90
 Identities = 164/400 (41%), Positives = 256/400 (64%), Gaps = 7/400 (1%)

Query: 302 IANPKESATNKPAKTDSSVSS--IRVDIEKVDNLINLVGELVITQSMLTELGNDFSMDKL 359
           I N  ++ + K A+  SS  S  +RV+IEK+D L+NLVGE+VI ++  T++   + + +L
Sbjct: 523 IKNTVDATSKKQAENSSSKKSQTVRVNIEKLDKLMNLVGEVVINRANFTQIATKYDLKEL 582

Query: 360 DKLKAGLAQLLQNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQT 419
                 L  L   + +LQE V+ +RM+P++F F+RFPR VRD    L K++D +I+G   
Sbjct: 583 HNAVGRLNML---ATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDI 639

Query: 420 ELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISD 479
           ELD+TVL+ + +PL HL+RN +DHG+E  D R+  GKPE G++ L A  Q   + + I D
Sbjct: 640 ELDRTVLDELAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRD 699

Query: 480 DGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMD 539
           DG GID + + +KA EKG L  + +   LTD + +N+IF PGFSTAE VSD+SGRGVGMD
Sbjct: 700 DGKGIDPEAMRKKAFEKG-LYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMD 758

Query: 540 VVRRNIEELGGQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESIQ 599
           VVR  IE LGG + V+SE+G+G+  T+ LPLT+AI+   L+++ + +Y +PL ++++ I 
Sbjct: 759 VVRSKIESLGGSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVIS 818

Query: 600 INTASVKHAAGGIELYRLREENIPILRLQDELAMGRSGSLEKRLICFVESAGHRVGLLVD 659
           +    +K+  G  E    R   +P++ L+D L        +   +  VE    +VG+++D
Sbjct: 819 VEKEQIKNLEGQ-EAIIYRNHILPVIWLKDALNTSGFSDSDDLYVVVVEKNKGKVGMILD 877

Query: 660 DLLDQQQVVIKSLESNYAKVAGISGATILGDGSVSLILDI 699
           +++ + ++V+K L      + G++GATILGDG V+LILD+
Sbjct: 878 EVIGRDEIVVKPLTGILKNINGLAGATILGDGRVALILDL 917



 Score = 75.5 bits (184), Expect = 1e-17
 Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 4/113 (3%)

Query: 4   DMEQLRKIFHVECRENLETLEGELLQLDPSQVDLE-VLNTIFRAAHSIKGGAGTFNLHEI 62
           DMEQ +++F  E  E+L++L   +++L+    D E ++N IFR+AH++KG A T     I
Sbjct: 3   DMEQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHI 62

Query: 63  SEFTHAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNM---LDSREQETAID 112
           S  TH +E  LD IR+ K ++  + VD L K  D +  M   +   E  T++D
Sbjct: 63  SSLTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVD 115