Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 758 a.a., chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  341 bits (874), Expect = 9e-98
 Identities = 246/768 (32%), Positives = 385/768 (50%), Gaps = 67/768 (8%)

Query: 1   MALDM-EQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNL 59
           MA D+ E++ + F +E  E LE L+ +L+ L+ +  D ++LN IFR  H++KGGAG  +L
Sbjct: 1   MAFDVDEEILQDFLIEAGEILELLQEQLVALENNPDDTDLLNAIFRGFHTVKGGAGFLSL 60

Query: 60  -------HEISEFTHAVETYLDLIRNQKKQLTAQGVDT---------------------- 90
                  HE       + T    +  +   +  Q VD                       
Sbjct: 61  TPMVDVCHEAENTFDLLRTGKRSVTAELMDIILQAVDAINTMFAQTQQGEQQDPADAALL 120

Query: 91  ----LLKSCDVIRNMLDSR--------EQETAIDEALKQQVGAELQALLADQGA---DRV 135
               LL S + + + L  R        E E  I+  ++  V  E+     D  +   D +
Sbjct: 121 AKLKLLSSGEPLPSELGQRAPEPELIPEPEPVIETIVEVAVVEEMPVETVDSASSSIDEI 180

Query: 136 MSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVPHETLFYSGNDPL-----RILREL 190
                    +    N     +A  +  A        P      SG+D        +L EL
Sbjct: 181 NDAEFEALLDALHGNGKGPGVATSNVAAASISNAVKPPAQAATSGDDITDDEFEALLDEL 240

Query: 191 RELGS---EYQIELDHQALPELAEIDPELCYLSWTIRLTGDVSENDVRELFDWVEDECDL 247
              G    + +  +  +   E+          + T   + ++++++   L D +  +   
Sbjct: 241 HGSGKFSGKVEESVPAKLKAEVVAAPASATVPTATSVDSDEITDDEFERLLDELHGKGGT 300

Query: 248 HIAPILSDEASAHVEDEQAAPAATLQSNPQTQVEPVAIVDLPAVEPPVATVAPVIANPKE 307
            +  +   EA+  V    AA A  +             V  P  E  VA  APV A    
Sbjct: 301 PVKAVAKAEAAKTVPTPVAATATPVAPKASVTAAIPPTVK-PKAEVVVAEKAPVKAAAAA 359

Query: 308 SATNKPAKTDSSVSSIRVDIEKVDNLINLVGELVITQSMLTELGNDFSMDKLDKLKAGLA 367
           S+T+ P       +++RVD  ++D ++N+VGELV+ ++ L  LG   S D  +  KA LA
Sbjct: 360 SSTSVP----QGETTVRVDTARLDQIMNMVGELVLVRNRLVSLG--ISRDDEEMSKA-LA 412

Query: 368 QLLQNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELDKTVLE 427
            L   + DLQ  V+  RM P+   F RFPR+VRDL   L K++DL + GE+T+LDK ++E
Sbjct: 413 NLDLVTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARTLNKEIDLVLVGEETDLDKNLVE 472

Query: 428 RIVDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDDGAGIDCD 487
            + DPLVHLVRN +DHG+EMP+ R A GKP TGVITL A  +G  I+++I DDGAG+D +
Sbjct: 473 ALADPLVHLVRNSVDHGIEMPNDREASGKPRTGVITLSASQEGDHILLKIEDDGAGMDPE 532

Query: 488 KLWRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDVVRRNIEE 547
           KL + A+++GVL+ +   + +TD +  NLIFAPGFST  ++SDISGRGVGMDVV+  I +
Sbjct: 533 KLKQIAIKRGVLD-EDSAARMTDNEAYNLIFAPGFSTKVEISDISGRGVGMDVVKTRITQ 591

Query: 548 LGGQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESIQINTASVKH 607
           L G + +DS  G+G+   I +PLTLAI+   +V VA QV+ +PL ++ E   ++      
Sbjct: 592 LNGTVHIDSMKGKGTILEIKVPLTLAIMPTLMVDVAKQVFALPLSSVNEIFHLDLTKTNI 651

Query: 608 AAGGIELYRLREENIPILRLQDELAMGRS----GSLEKRLICFVESAGHRVGLLVDDLLD 663
             G + +  +R + +P+  L+  L   ++    G  +   +  V+    ++G +VD L+ 
Sbjct: 652 VDGQLTVI-VRNKAVPLFYLEHWLHRNKTNFKHGDKKHGHVVIVQLGIMQIGFVVDALIG 710

Query: 664 QQQVVIKSLESNYAKVAGISGATILGDGSVSLILDIPGLIAHFMKRSS 711
           Q++VVIK L +      G++GATI  DG ++LILD+PGL+ H+ K  S
Sbjct: 711 QEEVVIKPLGALLHGTPGMAGATITSDGGIALILDVPGLLKHYAKNKS 758