Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 702 a.a., chemotaxis protein CheA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  457 bits (1176), Expect = e-133
 Identities = 282/718 (39%), Positives = 428/718 (59%), Gaps = 38/718 (5%)

Query: 1   MALDMEQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLH 60
           M+++M +  ++F  E  E+LE +E  L+ ++    D E LNTIFRAAHSIKGG+G F   
Sbjct: 1   MSINMAEFHQVFFEESHEHLENMEQLLIAINLQSPDPEELNTIFRAAHSIKGGSGIFGFT 60

Query: 61  EISEFTHAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVG 120
            +S  TH +E  LD +R    +L++  +D LLK+ D + ++L    +E  ID   +Q   
Sbjct: 61  ALSSVTHVMENLLDKVRKGTFELSSGIIDLLLKTVDTLSHILSLYREEEPID--WQQVEF 118

Query: 121 AELQALLADQGADRVMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVPHETLFYSG 180
           A+ Q + A  G   + +  + + +    + +   A+ + DA+ Q   I F      F+  
Sbjct: 119 AKNQLVAALNGDPFLTTSPEAIPATPTKTEITQTAVVVSDASHQD-DIGFG-----FFED 172

Query: 181 NDPLRILRELRELG--------SEYQIE------LDHQALPELAEIDPELCYLSWTIRLT 226
           +  L +  E ++ G         E  +E      LD Q +    E D +L +  +   LT
Sbjct: 173 DVELTLAIENQDFGFFDEAFTAKEISVEDINKTLLDSQLVTN-TEPDDDLGF-GFFESLT 230

Query: 227 GDVSENDVRELFDWVEDECDLHIAPILSDEASAHVEDEQAAPAATLQSNPQTQVEPVAIV 286
            +  ++++  L     ++    I P+     S  V      P  T  +   T+V P   V
Sbjct: 231 PESVDSEINALVHIQANKAIAAIEPLSKPVNSPSVPK---IPRYTGNTAESTKVAPADPV 287

Query: 287 D-LPAVEPPVATVAPVIANPKESATNKPAKTDSSVSSIRVDIEKVDNLINLVGELVITQS 345
           D  P +   VA+          +A  K   T +  +++RV+  K+D L+NL GELVITQS
Sbjct: 288 DPSPVLNKSVASGT----KSTPTAATKKGNTSTQDATLRVETSKIDTLVNLAGELVITQS 343

Query: 346 MLTELGNDFSMDKLDKLKAGLAQLLQNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGR 405
           MLT +GN+ S +  ++LK  L +L +N++++QE V+++RMLP+SF F+RF RLVRDL  +
Sbjct: 344 MLTLIGNEISGELGERLKTALVELERNTREMQEAVMSVRMLPVSFVFNRFHRLVRDLSDQ 403

Query: 406 LGKKVDLQIQGEQTELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLK 465
           LGK V+L I+G  TE+DK ++E++VDPL HLVRN +DHG+E P+VR   GK E   ++L+
Sbjct: 404 LGKNVNLVIEGGNTEIDKGMIEKLVDPLTHLVRNSLDHGIEKPEVRRLLGKAEIAQLSLR 463

Query: 466 AFHQGGSIIVEISDDGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTA 525
           A  +GG+I++ + DDGAG+  +K+ +KA E  +    +   ++ DKQI  LIFA GFSTA
Sbjct: 464 ASQRGGNIVIAVHDDGAGLHREKILQKARENNM----SVTDNMPDKQIWQLIFAAGFSTA 519

Query: 526 EQVSDISGRGVGMDVVRRNIEELGGQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQ 585
           ++++D+SGRGVGMDVVRRNIE LGG+I++DS  G+G+ F I LPLTLAI+DG  V V  Q
Sbjct: 520 KEITDVSGRGVGMDVVRRNIEALGGRIDIDSVAGQGATFEIQLPLTLAIVDGMSVSVGKQ 579

Query: 586 VYVIPLLTIVESIQINTASVKHAAGGIELYRLREENIPILRLQDELAMGRSGSL-EKRLI 644
           +Y++PL+ I+ESIQ +T  +K+ A    L R+REE +P+L L   + +       E+ ++
Sbjct: 580 IYILPLVHIIESIQPHTEQLKYLAQE-RLIRVREEYLPLLNLHQLMEITPFAKCPEEGIV 638

Query: 645 CFVESAGHRVGLLVDDLLDQQQVVIKSLESNYAKVAGISGATILGDGSVSLILDIPGL 702
             +ES   R GL VD L+ QQQVVIKSLE +Y ++ G+SGATI+GDGSV+LILD+  L
Sbjct: 639 VLLESNNKRFGLCVDALVGQQQVVIKSLEKHYRRIPGVSGATIMGDGSVALILDVESL 696