Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 762 a.a., CheA signal transduction histidine kinases (RefSeq) from Shewanella sp. ANA-3

 Score =  329 bits (844), Expect = 3e-94
 Identities = 191/465 (41%), Positives = 280/465 (60%), Gaps = 15/465 (3%)

Query: 254 SDEASAHVEDEQAAPAATLQSNPQTQVEPVAIVDLPAVEPPVAT---VAPVIANPKESAT 310
           ++ A A  E  +A P+A     P T   P A V  PA  P V     VA     P ++A 
Sbjct: 306 AESAPAKTEPAKAPPSAAA---PSTPAAPKASVATPATPPAVKAKTDVAVAEKAPAKAAA 362

Query: 311 NKPAKTDSSVSSIRVDIEKVDNLINLVGELVITQSMLTELGNDFSMDKLDKLKAGLAQLL 370
              A      +++RVD  ++D ++N+VGELV+ ++ L  LG   S D  +  KA LA L 
Sbjct: 363 AASANVPQGETTVRVDTARLDQIMNMVGELVLVRNRLLSLG--ISRDDEEMSKA-LANLD 419

Query: 371 QNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELDKTVLERIV 430
             + DLQ  V+  RM P+   F RFPR+VRDL   L K++DL + GE+T+LDK ++E + 
Sbjct: 420 LVTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARTLNKEIDLVLVGEETDLDKNLVEALA 479

Query: 431 DPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDDGAGIDCDKLW 490
           DPLVHLVRN +DHG+EMP+ R A GKP TG ITL A  +G  I+++I DDGAG+D +KL 
Sbjct: 480 DPLVHLVRNSVDHGIEMPNDREASGKPRTGTITLSASQEGDHILLKIEDDGAGMDPEKLK 539

Query: 491 RKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDVVRRNIEELGG 550
           + A+++GVL+  T  + +TD +  NLIFAPGFST  ++SDISGRGVGMDVV+  I +L G
Sbjct: 540 QIAIKRGVLDEDT-AARMTDSEAYNLIFAPGFSTKVEISDISGRGVGMDVVKTRITQLNG 598

Query: 551 QIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESIQINTASVKHAAG 610
            + +DS  G+G+   I +PLTLAI+   +V VA QV+ +PL ++ E   ++        G
Sbjct: 599 TVHIDSMKGKGTVLEIKVPLTLAIMPTLMVDVAKQVFALPLSSVNEIFHLDLTKTNIVDG 658

Query: 611 GIELYRLREENIPILRLQDELAMGRS----GSLEKRLICFVESAGHRVGLLVDDLLDQQQ 666
            + +  +R + +P+  L+  L   R+    G  +   +  V+    ++G +VD L+ Q++
Sbjct: 659 QLTVI-VRNKAVPLFYLEQWLHRNRTNFKHGDKKHGHVVIVQLGMMQIGFVVDALIGQEE 717

Query: 667 VVIKSLESNYAKVAGISGATILGDGSVSLILDIPGLIAHFMKRSS 711
           VVIK L +      G++GATI  DG ++LILD+PGL+ H+ K  S
Sbjct: 718 VVIKPLGALLHGTPGMAGATITSDGGIALILDVPGLLKHYAKNKS 762



 Score = 75.5 bits (184), Expect = 9e-18
 Identities = 50/161 (31%), Positives = 88/161 (54%), Gaps = 12/161 (7%)

Query: 1   MALDM-EQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNL 59
           MA D+ E++ + F +E  E LE L+ +L+ L+ +  D  +LN IFR  H++KGGAG  +L
Sbjct: 1   MAFDVDEEILQDFLIEAGEILELLQEQLVALENNPDDTNLLNAIFRGFHTVKGGAGFLSL 60

Query: 60  HEISEFTHAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQV 119
             + +  H  E   DL+R  K+ ++A+ +D +L++ D I  M    +Q        +QQ 
Sbjct: 61  TPMVDVCHEAENTFDLLRTGKRSVSAELMDIILQAVDAINTMFAQTQQG-------EQQD 113

Query: 120 GAELQALLADQGADRVMSQAQPVSSNTHTSNMHADAIAIPD 160
            A+  ALLA     +++S  +P+ S +  S+   + +  P+
Sbjct: 114 PAD-PALLAKL---KMLSSGEPLPSESGQSSAEVEPLPEPE 150