Pairwise Alignments

Query, 175 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., CheW protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 74.3 bits (181), Expect = 3e-18
 Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 5/96 (5%)

Query: 30  FLSFMLGTELYGVTLSHVEEI-RVWEKPTPIPRAPHFVKGVINLRGMIVPIIDLRQRFGL 88
           F++F L  E YGV +  V+EI RV E+ T +P+ P F++GV+NLRG+++P++D R+RFGL
Sbjct: 386 FVAFRLMNEEYGVPIDSVQEIVRVPEELTRVPKTPDFIEGVVNLRGVVLPVVDQRRRFGL 445

Query: 89  TQYEYLPTTVVLILSAREQEQKRLMGLVVDSVSDVI 124
              E      +++ + R        G +VDSVS+VI
Sbjct: 446 PGMERNDRQRIMVYTIRGVR----TGFIVDSVSEVI 477



 Score = 63.9 bits (154), Expect = 4e-15
 Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 8/132 (6%)

Query: 30  FLSFMLGTELYGVTLSHVEEIRVWEKPTPIPRAPHFVKGVINLRGMIVPIIDLRQRFGLT 89
           F+ F +  +L+ V LS V+EI        +P +P  ++G+ NLRG ++P+I LR  FG+ 
Sbjct: 35  FVIFHVDNDLFAVPLSEVQEIIRMPDVVCVPLSPAALEGLANLRGSVLPVIRLRHVFGMA 94

Query: 90  QYEYLPTTVVLILSAREQEQKRLMGLVVDSVSDVIGQGDMPLHP--AIGESMVVPFLSGI 147
              +   T V++L     +Q R +GLVVD V++V+      + P  AIG ++    L+G+
Sbjct: 95  PVVHDDATRVVVL-----DQGRPVGLVVDRVANVVSVEADHIEPSGAIGGTVDTDLLTGM 149

Query: 148 L-NVGDEVMSLL 158
           +   GD  M ++
Sbjct: 150 IKGDGDRAMVMI 161



 Score = 60.1 bits (144), Expect = 6e-14
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 16/154 (10%)

Query: 28  ADFLSFMLGTELYGVTLSHVEEI-RVWEKPTPIPRAPHFVKGVINLRGMIVPIIDLRQRF 86
           +  +SF +  + Y + +  V+EI ++    T +P  P  V GV+ LR  ++P++ LR+ F
Sbjct: 205 SQLVSFEVAGQEYALPIERVQEIVQIPGLITDVPNTPAHVLGVMTLRNRLLPLVGLREMF 264

Query: 87  GLTQYEYLPTT--VVLILSAREQEQKRLMGLVVDSVSDVIGQGDMPLHPA---------I 135
           GL       T   VV+ L        R +G+V+DSV +V+  G   + P          +
Sbjct: 265 GLPTLALTETNKIVVVSLEGGAGGSGRSVGVVMDSVKEVLRVGHALIDPMPALLARTGNL 324

Query: 136 GESMVVPFLSGILNVGDEVMSLLDSDALLDMDRI 169
           GE   +  L G    G+ ++S+L +DA+ + D I
Sbjct: 325 GEIEAICRLQG----GNRLVSILSADAMFNSDEI 354