Pairwise Alignments

Query, 153 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., CheW protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 71.2 bits (173), Expect = 2e-17
 Identities = 46/145 (31%), Positives = 84/145 (57%), Gaps = 5/145 (3%)

Query: 3   QREFLSFVLDDEEYGIPILEVRE-VRGWSPVRILPNAPPFVIGLLDIRGEYIPIVDLKRR 61
           + +F++F L +EEYG+PI  V+E VR    +  +P  P F+ G++++RG  +P+VD +RR
Sbjct: 383 EEQFVAFRLMNEEYGVPIDSVQEIVRVPEELTRVPKTPDFIEGVVNLRGVVLPVVDQRRR 442

Query: 62  LGLVPVEINATTVVVVINAANQQPLGLIVDAVAEVYALSEQEIKHAPSISTVIGNQYVKG 121
            GL  +E N    ++V      +  G IVD+V+EV  +    I  AP +S     + ++ 
Sbjct: 443 FGLPGMERNDRQRIMVYTIRGVR-TGFIVDSVSEVIRIPASLIGPAPVLSDE-QQRLIRR 500

Query: 122 IAAV--KSKHLVLIDIDALFDVEAL 144
           +A +  + + ++L+D++ L D + L
Sbjct: 501 VANIEKQKRMILLLDVEQLLDGKEL 525



 Score = 68.9 bits (167), Expect = 1e-16
 Identities = 37/134 (27%), Positives = 75/134 (55%), Gaps = 2/134 (1%)

Query: 4   REFLSFVLDDEEYGIPILEVREVRGWSPVRILPNAPPFVIGLLDIRGEYIPIVDLKRRLG 63
           R+F+ F +D++ + +P+ EV+E+     V  +P +P  + GL ++RG  +P++ L+   G
Sbjct: 33  RQFVIFHVDNDLFAVPLSEVQEIIRMPDVVCVPLSPAALEGLANLRGSVLPVIRLRHVFG 92

Query: 64  LVPVEINATTVVVVINAANQQPLGLIVDAVAEVYALSEQEIKHAPSISTVIGNQYVKGIA 123
           + PV  +  T VVV++    +P+GL+VD VA V ++    I+ + +I   +    + G+ 
Sbjct: 93  MAPVVHDDATRVVVLDQG--RPVGLVVDRVANVVSVEADHIEPSGAIGGTVDTDLLTGMI 150

Query: 124 AVKSKHLVLIDIDA 137
                  +++ +DA
Sbjct: 151 KGDGDRAMVMILDA 164



 Score = 58.9 bits (141), Expect = 1e-13
 Identities = 37/152 (24%), Positives = 82/152 (53%), Gaps = 9/152 (5%)

Query: 3   QREFLSFVLDDEEYGIPILEVRE-VRGWSPVRILPNAPPFVIGLLDIRGEYIPIVDLKRR 61
           + + +SF +  +EY +PI  V+E V+    +  +PN P  V+G++ +R   +P+V L+  
Sbjct: 204 ESQLVSFEVAGQEYALPIERVQEIVQIPGLITDVPNTPAHVLGVMTLRNRLLPLVGLREM 263

Query: 62  LGLVPVEINATTVVVVIN-----AANQQPLGLIVDAVAEVYALSEQEIKHAPSISTVIGN 116
            GL  + +  T  +VV++       + + +G+++D+V EV  +    I   P++    GN
Sbjct: 264 FGLPTLALTETNKIVVVSLEGGAGGSGRSVGVVMDSVKEVLRVGHALIDPMPALLARTGN 323

Query: 117 -QYVKGIAAVK--SKHLVLIDIDALFDVEALR 145
              ++ I  ++  ++ + ++  DA+F+ + +R
Sbjct: 324 LGEIEAICRLQGGNRLVSILSADAMFNSDEIR 355