Pairwise Alignments
Query, 678 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 860 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B
Score = 489 bits (1260), Expect = e-142
Identities = 275/649 (42%), Positives = 407/649 (62%), Gaps = 34/649 (5%)
Query: 39 QLLSALNAAQTALMMIDRDFRITYFNNQTLKLLKQHETLFRSVWPDFRAEADFLHGYCID 98
++ AL+ Q +MM D + I YFN+ +L +E R F + L G ID
Sbjct: 237 RIKQALDVCQANVMMADENNNIIYFNHSLQAMLAGNEEKLRESINRF--DVSTLMGTNID 294
Query: 99 HFHLNPRHQRTMLADPSHLPYTTVINIKGVKIELIVGAIIDDRGSYIGNTLEWRDVTEEL 158
FH +P HQR +LA + Y I + G+ +LI + D+ G G +EW D+T +L
Sbjct: 295 IFHKHPEHQRQLLAKLTS-SYKARIKVAGLTFDLIATPVFDN-GKRTGTVVEWSDITAQL 352
Query: 159 LRDQ-------QIGRLASAVEGMTTNLMMADKEGIIQYLNPALLQLLTHREPELAQAFPG 211
R++ + R+ A++ +++N M+AD + I YLN A+ ++ + + ++ + P
Sbjct: 353 AREEKERALAAENARIRQALDNVSSNTMVADADCNIIYLNDAVKKMFSIAQSDIVRDLPN 412
Query: 212 FKAAELVGKNIDIFHKNPAHQRSIISNPERLPFTSMIKVGSLEFNLTCIAMRDTKGEYIG 271
F + +L+G NID+FHKNPAHQR++++N +TS +KVG F + + DT G IG
Sbjct: 413 FNSNKLMGANIDVFHKNPAHQRNLLANLTST-YTSQLKVGGRTFRIIANPINDTDGTRIG 471
Query: 272 PALQWVDITEQRDGQRQVESLIQKAIKGDLHDRINTSGYNGFMRELGDGINNLLNTLVEP 331
++W D T + + +++ +I A GDL RI T GF L +G+N+L+
Sbjct: 472 TVVEWADRTAETAIEHEIDGIIAAASSGDLSQRIATHDKEGFFLNLSNGLNSLVGIADNV 531
Query: 332 LGQCITVMSRVAEGDLNTSMSEEYQGEFGRLASAVNASIVNLRNMVDKITVSSARVATAS 391
+ + + +A+GDL ++ EY+G+FG+L + NA++ L ++ I+ S+ V + +
Sbjct: 532 ISDVVDMFDGLAKGDLTRKINGEYEGQFGKLKADANATVSRLTEVLGGISESANTVTSGA 591
Query: 392 TEIADGNNDLSQRVEAQASNLEETAASMEEITATVRQNADNAKDANLLATDAAKKAARGG 451
EIA GN DLSQR E QA++LEETA+SME++TATV+Q+A+NA AN LA +A+ KA GG
Sbjct: 592 EEIAQGNADLSQRTEEQAASLEETASSMEQMTATVKQSAENATLANTLAKEASTKADHGG 651
Query: 452 EVVGEAISAMGAINTASKKIADIISVIDEIAFQTNLLALNAAVEAARAGEQGRGFAVVAG 511
+VV +A++AM AIN +SK+IADII VIDEIAFQTNLLALNAAVEAARAGEQGRGFAVVAG
Sbjct: 652 KVVKQAVTAMEAINESSKRIADIIGVIDEIAFQTNLLALNAAVEAARAGEQGRGFAVVAG 711
Query: 512 EVRNLAQRSAGAAKEIKGLINDSVDKVNEGSRLVNESGSTLKEIVEAVVRVSDLIAQIAA 571
EVRNLAQRSAGAAKEIK LI DSV+KVN+G+ LVN+SG+TL+EIV AV +V+++I +I+
Sbjct: 712 EVRNLAQRSAGAAKEIKELIRDSVNKVNDGTSLVNQSGNTLQEIVHAVSKVAEMINEISV 771
Query: 572 SSVEQSTGIDEINRAIAAMDEMTQQNASLVEETSAASQSLKDEGKELLNLMNFFVTENNV 631
++ +Q++GI E+N+A++ MDEMTQQNA+LVEE SAA ++ ++ + + + FF T+
Sbjct: 772 AAEQQASGIQEVNKAVSQMDEMTQQNAALVEEVSAAGDAMAEQARNMRRQLGFFRTD--- 828
Query: 632 TTFERKPRQSTPPKTKPVVSMHKAPINQAV--HKMPARAAEEGDEWEEF 678
V + AP+ K P + +EW EF
Sbjct: 829 -----------------VQASSAAPLALVAGGEKRPTKFKASKEEWHEF 860
Score = 139 bits (351), Expect = 4e-37
Identities = 155/648 (23%), Positives = 274/648 (42%), Gaps = 81/648 (12%)
Query: 41 LSALNAAQTALMMIDRDFRITYFNNQTLKLLKQHETLFRSVWPDFRAEADFLHGYCIDHF 100
L AL+ Q +M+ D + I YFN+ L E R P+F + L G +D F
Sbjct: 108 LKALDICQANVMLADPNGEILYFNDSLRTTLSDAEADIRKELPNF--DVSRLQGANMDSF 165
Query: 101 HLNPRHQRTMLADPSHLPYTTVINIKGVKIELIVGAIIDDRGSYIGNTLEWRDVTEELLR 160
H +P HQR ++A Y+ I + LI + D++ I +EW+D+TE L R
Sbjct: 166 HRDPSHQRRLIAGLKST-YSAKIKVGTRTFSLIASPVFDEQHQRIATVVEWQDLTESLAR 224
Query: 161 DQ-------QIGRLASAVEGMTTNLMMADKEGIIQYLNPALLQLLTHREPELAQAFPGFK 213
Q + R+ A++ N+MMAD+ I Y N +L +L E +L ++ F
Sbjct: 225 QQAEEKLIRETNRIKQALDVCQANVMMADENNNIIYFNHSLQAMLAGNEEKLRESINRFD 284
Query: 214 AAELVGKNIDIFHKNPAHQRSIISNPERLPFTSMIKVGSLEFNLTCIAMRDTKGEYIGPA 273
+ L+G NIDIFHK+P HQR +++ + + IKV L F+L + D G+ G
Sbjct: 285 VSTLMGTNIDIFHKHPEHQRQLLAKLTS-SYKARIKVAGLTFDLIATPVFD-NGKRTGTV 342
Query: 274 LQWVDITEQRDGQRQVESL------IQKAIK------------------GDLHDRINTSG 309
++W DIT Q + + +L I++A+ D ++ +
Sbjct: 343 VEWSDITAQLAREEKERALAAENARIRQALDNVSSNTMVADADCNIIYLNDAVKKMFSIA 402
Query: 310 YNGFMRELGDGINNLLNTLVEPLGQCITVMSR--VAEGDLNTSMSEEY--QGEFGRLASA 365
+ +R+L + +N L +G I V + + +L +++ Y Q + G
Sbjct: 403 QSDIVRDLPNFNSNKL------MGANIDVFHKNPAHQRNLLANLTSTYTSQLKVGGRTFR 456
Query: 366 VNASIVNLRNMVDKITVSSARVATASTEI---------ADGNNDLSQRV-----EAQASN 411
+ A+ +N + TV TA T I A + DLSQR+ E N
Sbjct: 457 IIANPINDTDGTRIGTVVEWADRTAETAIEHEIDGIIAAASSGDLSQRIATHDKEGFFLN 516
Query: 412 LEETAASMEEITATVRQNADNAKDANLLATDAAKKAARGGEVVGEAISAMGAINTASKKI 471
L S+ I V + + D L D +K GE G+ N ++
Sbjct: 517 LSNGLNSLVGIADNVISDVVDMFD-GLAKGDLTRKI--NGEYEGQFGKLKADANATVSRL 573
Query: 472 ADIISVIDE----IAFQTNLLALNAAVEAARAGEQGRGFAVVAGEVRNL---AQRSAGAA 524
+++ I E + +A A + R EQ A + + ++SA A
Sbjct: 574 TEVLGGISESANTVTSGAEEIAQGNADLSQRTEEQAASLEETASSMEQMTATVKQSAENA 633
Query: 525 KEIKGLINDSVDKVNEGSRLVNESGSTLKEIVEAVVRVSDLIAQIAASSVEQSTGIDEIN 584
L ++ K + G ++V ++ + ++ I E+ R++D+I I + T + +N
Sbjct: 634 TLANTLAKEASTKADHGGKVVKQAVTAMEAINESSKRIADIIGVI--DEIAFQTNLLALN 691
Query: 585 RAIAAMDEMTQ---------QNASLVEETSAASQSLKDEGKELLNLMN 623
A+ A Q + +L + ++ A++ +K+ ++ +N +N
Sbjct: 692 AAVEAARAGEQGRGFAVVAGEVRNLAQRSAGAAKEIKELIRDSVNKVN 739
Score = 94.0 bits (232), Expect = 3e-23
Identities = 125/550 (22%), Positives = 229/550 (41%), Gaps = 103/550 (18%)
Query: 151 WRDVTEELL---RDQQIGRLA-SAVEGMTTNLMMADKEGIIQYLNPALLQLLTHREPELA 206
W++ +EE +QQ GR A++ N+M+AD G I Y N +L L+ E ++
Sbjct: 87 WQEFSEEFAIFWDEQQKGRATLKALDICQANVMLADPNGEILYFNDSLRTTLSDAEADIR 146
Query: 207 QAFPGFKAAELVGKNIDIFHKNPAHQRSIISNPERLPFTSMIKVGSLEFNLTCIAMRDTK 266
+ P F + L G N+D FH++P+HQR +I+ + +++ IKVG+ F+L + D +
Sbjct: 147 KELPNFDVSRLQGANMDSFHRDPSHQRRLIAGLKST-YSAKIKVGTRTFSLIASPVFDEQ 205
Query: 267 GEYIGPALQWVDITEQRDGQRQVESLIQKAIKGDLHDRINTSGYNGFMRELGDGINNLLN 326
+ I ++W D+TE Q+ E LI++ + + ++ N M + + I +
Sbjct: 206 HQRIATVVEWQDLTESLARQQAEEKLIRETNR--IKQALDVCQANVMMADENNNIIYFNH 263
Query: 327 TLVEPL-GQCITVMSRVAEGDLNTSMSEEYQGEFGRLASAVNASIVNLRNMVDKITVS-S 384
+L L G + + D++T M G + + R ++ K+T S
Sbjct: 264 SLQAMLAGNEEKLRESINRFDVSTLM--------GTNIDIFHKHPEHQRQLLAKLTSSYK 315
Query: 385 ARVATA-------STEIADGNNDLSQRVE-----AQASNLEETAASMEEITATVRQNADN 432
AR+ A +T + D VE AQ + E+ A E A +RQ DN
Sbjct: 316 ARIKVAGLTFDLIATPVFDNGKRTGTVVEWSDITAQLAREEKERALAAE-NARIRQALDN 374
Query: 433 AKDANLLA---------TDAAKKAARGGEVVGEAISAMGAINTASKKIADIISVIDEIAF 483
++A DA KK + + + + N+ A+I A
Sbjct: 375 VSSNTMVADADCNIIYLNDAVKKMFSIAQ--SDIVRDLPNFNSNKLMGANIDVFHKNPAH 432
Query: 484 QTNLLALNAAVEAARAGEQGRGFAVVA-----------GEVRNLAQRSAGAA--KEIKGL 530
Q NLLA + ++ GR F ++A G V A R+A A EI G+
Sbjct: 433 QRNLLANLTSTYTSQLKVGGRTFRIIANPINDTDGTRIGTVVEWADRTAETAIEHEIDGI 492
Query: 531 I-----NDSVDKV-------------NEGSRLVNESGSTLKEIVE--------------- 557
I D ++ N + LV + + + ++V+
Sbjct: 493 IAAASSGDLSQRIATHDKEGFFLNLSNGLNSLVGIADNVISDVVDMFDGLAKGDLTRKIN 552
Query: 558 ----------------AVVRVSDLIAQIAASSVEQSTGIDEINRAIAAMDEMTQQNASLV 601
V R+++++ I+ S+ ++G +EI + A + + T++ A+ +
Sbjct: 553 GEYEGQFGKLKADANATVSRLTEVLGGISESANTVTSGAEEIAQGNADLSQRTEEQAASL 612
Query: 602 EETSAASQSL 611
EET+++ + +
Sbjct: 613 EETASSMEQM 622
Score = 79.3 bits (194), Expect = 7e-19
Identities = 113/510 (22%), Positives = 204/510 (40%), Gaps = 50/510 (9%)
Query: 27 DESETQSGLSNYQLLSALNAAQTALMMIDRDFRITYFNNQTLKLLKQHETLFRSVWPDFR 86
+E E N ++ AL+ + M+ D D I Y N+ K+ ++ P+F
Sbjct: 355 EEKERALAAENARIRQALDNVSSNTMVADADCNIIYLNDAVKKMFSIAQSDIVRDLPNFN 414
Query: 87 AEADFLHGYCIDHFHLNPRHQRTMLADPSHLPYTTVINIKGVKIELIVGAIIDDRGSYIG 146
+ L G ID FH NP HQR +LA+ + YT+ + + G +I I D G+ IG
Sbjct: 415 SNK--LMGANIDVFHKNPAHQRNLLANLTS-TYTSQLKVGGRTFRIIANPINDTDGTRIG 471
Query: 147 NTLEWRDVTEELLRDQQI-GRLASAVEG-MTTNLMMADKEGIIQYLNPALLQLLTHRE-- 202
+EW D T E + +I G +A+A G ++ + DKEG L+ L L+ +
Sbjct: 472 TVVEWADRTAETAIEHEIDGIIAAASSGDLSQRIATHDKEGFFLNLSNGLNSLVGIADNV 531
Query: 203 -PELAQAFPGFKAAELV----GKNIDIFHKNPAHQRSIISNPERL-----PFTSMIKVGS 252
++ F G +L G+ F K A + +S + + + G+
Sbjct: 532 ISDVVDMFDGLAKGDLTRKINGEYEGQFGKLKADANATVSRLTEVLGGISESANTVTSGA 591
Query: 253 LEFNLTCIAMRDTKGEYIGPALQWVDITEQRDGQRQVESLIQKAIKGDLHDRINT-SGYN 311
E + E + EQ + +S + L +T + +
Sbjct: 592 EEIAQGNADLSQRTEEQAASLEETASSMEQMTATVK-QSAENATLANTLAKEASTKADHG 650
Query: 312 GFMRELGDGINNLLNTLVEPLGQCITVMSRVAEGD----LNTSMSEEYQGEFGRLASAVN 367
G + + +N + + I V+ +A LN ++ GE GR + V
Sbjct: 651 GKVVKQAVTAMEAINESSKRIADIIGVIDEIAFQTNLLALNAAVEAARAGEQGRGFAVVA 710
Query: 368 ASIVNLRNMVDKITVSSARVATASTEIADGNNDLSQRVEAQASNLEETAASMEEITATVR 427
+ NL + R A A+ EI + D +V S + ++ +++EI V
Sbjct: 711 GEVRNL----------AQRSAGAAKEIKELIRDSVNKVNDGTSLVNQSGNTLQEIVHAVS 760
Query: 428 QNADNAKDANLLATDAAKKAARGGEVVGEAISAMGAINTASKKIADIISVIDEIA----- 482
+ A+ + ++ AA++ A G + V +A+S M + + + + +S +
Sbjct: 761 KVAEMINEISV----AAEQQASGIQEVNKAVSQMDEMTQQNAALVEEVSAAGDAMAEQAR 816
Query: 483 --------FQTNLLALNAAVEAARAGEQGR 504
F+T++ A +AA A AG + R
Sbjct: 817 NMRRQLGFFRTDVQASSAAPLALVAGGEKR 846