Pairwise Alignments
Query, 678 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 864 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella loihica PV-4
Score = 509 bits (1311), Expect = e-148
Identities = 293/679 (43%), Positives = 419/679 (61%), Gaps = 29/679 (4%)
Query: 7 KQQVVPQFVEPAKESATSEFDESETQSGLSNYQLLSALNAAQTALMMIDRDFRITYFNNQ 66
K Q + VE ++ ++E + N ++ AL+ + +M+ D D+ I Y N+
Sbjct: 208 KHQRIATVVEWQDKTEALAKADAENKLAQENSRIKQALDVCRANVMVADADYNIIYLNDS 267
Query: 67 TLKLLKQHETLFRSVWPDFRAEADFLHGYCIDHFHLNPRHQRTMLADPSHLPYTTVINIK 126
++LK +E + F + L G ID FH NP HQR ML D Y T I +
Sbjct: 268 VTQMLKDNEQTLQQTLTKFNTNS--LLGSNIDIFHQNPAHQRKML-DRLTGSYDTSIQVA 324
Query: 127 GVKIELIVGAIIDDRGSYIGNTLEWRDVTEELLRDQQIGRLAS-------AVEGMTTNLM 179
G+ LI + ++ G G +EW+DVTE+L ++ + +LA+ A++ +++N M
Sbjct: 325 GLDFTLIATPVFEN-GVRTGTVVEWQDVTEKLAKEAKERQLAAENARIKQALDNVSSNTM 383
Query: 180 MADKEGIIQYLNPALLQLLTHREPELAQAFPGFKAAELVGKNIDIFHKNPAHQRSIISNP 239
+AD + I Y+N A+ Q+ + ++A+ P F A+ L+G NID FHKNP+HQR+++
Sbjct: 384 VADADLNIIYMNKAVSQMFKQAQNDIAKDLPNFDASNLMGVNIDNFHKNPSHQRNLLKTL 443
Query: 240 ERLPFTSMIKVGSLEFNLTCIAMRDTKGEYIGPALQWVDITEQRDGQRQVESLIQKAIKG 299
+TS +KVG F + +RD GE IG ++W D T + + +++S+I A KG
Sbjct: 444 TTT-YTSQLKVGGRTFQVVANPIRDPNGESIGTVVEWADRTAEVAIEHEIDSIIGAASKG 502
Query: 300 DLHDRINTSGYNGFMRELGDGINNLLNTLVEPLGQCITVMSRVAEGDLNTSMSEEYQGEF 359
DL R+ T GF L +G+N L+ + +G + + +A+GDLN + EYQG+F
Sbjct: 503 DLSLRVGTQDKEGFFLNLSNGLNRLVGIADQVIGDVVNMFDGLAKGDLNRQIQGEYQGQF 562
Query: 360 GRLASAVNASIVNLRNMVDKITVSSARVATASTEIADGNNDLSQRVEAQASNLEETAASM 419
G+L + NA+ L ++D I S+ V + + EIA GN DLSQR E QA++LEETA+SM
Sbjct: 563 GKLQADANATAAKLTEVLDGINQSANTVTSGAEEIAQGNADLSQRTEEQAASLEETASSM 622
Query: 420 EEITATVRQNADNAKDANLLATDAAKKAARGGEVVGEAISAMGAINTASKKIADIISVID 479
EE+TATV Q+A NA AN LA +A KAA GG+VV +A++AM AIN +SK+IADII VID
Sbjct: 623 EEMTATVTQSAQNATVANQLAQEANTKAAHGGKVVEQAVTAMEAINESSKRIADIIGVID 682
Query: 480 EIAFQTNLLALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAGAAKEIKGLINDSVDKVN 539
EIAFQTNLLALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAGAAKEIK LI DSV KV
Sbjct: 683 EIAFQTNLLALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAGAAKEIKELIRDSVTKVT 742
Query: 540 EGSRLVNESGSTLKEIVEAVVRVSDLIAQIAASSVEQSTGIDEINRAIAAMDEMTQQNAS 599
+G++LVN+SG TL++IV+AV +V+D+I+QI+ +S +QS GI E+N+AI+ MDEMTQQNA+
Sbjct: 743 DGTQLVNQSGETLEDIVQAVTKVADMISQISIASDQQSAGIQEVNKAISQMDEMTQQNAA 802
Query: 600 LVEETSAASQSLKDEGKELLNLMNFFVTENNVTTFERKPRQSTPPKTKPVVSMHKAPINQ 659
LVE+ SAA ++ ++ + + + + FF QS P M AP++
Sbjct: 803 LVEQVSAAGDAMAEQARNMKSQLGFF--------------QSQAPMHS---GMTSAPLSL 845
Query: 660 AVHKMPARAAEEGDEWEEF 678
+EW EF
Sbjct: 846 VAGDSHGPLNISNEEWNEF 864
Score = 127 bits (320), Expect = 2e-33
Identities = 141/628 (22%), Positives = 259/628 (41%), Gaps = 82/628 (13%)
Query: 25 EFDESETQ---SGLSNYQLLSALNAAQTALMMIDRDFRITYFNNQTLKLLKQHETLFRSV 81
E +S TQ + N L AL Q +M+ D I + N + L++ E+ +
Sbjct: 92 EISQSLTQQWHANQGNQAQLRALEICQANVMLADPQGNINFLNQSLRQTLEKAESDIQQA 151
Query: 82 WPDFRAEADFLHGYCIDHFHLNPRHQRTMLADPSHLPYTTVINIKGVKIELIVGAIIDDR 141
F D L G +D FH P HQ+ ++A P++ I + LI + DD+
Sbjct: 152 IASF--SVDTLIGTNMDTFHQQPSHQQNIIAKLQR-PHSAQIKVGSRIFSLIASPVFDDK 208
Query: 142 GSYIGNTLEWRDVTEELLR-------DQQIGRLASAVEGMTTNLMMADKEGIIQYLNPAL 194
I +EW+D TE L + Q+ R+ A++ N+M+AD + I YLN ++
Sbjct: 209 HQRIATVVEWQDKTEALAKADAENKLAQENSRIKQALDVCRANVMVADADYNIIYLNDSV 268
Query: 195 LQLLTHREPELAQAFPGFKAAELVGKNIDIFHKNPAHQRSIISNPERL--PFTSMIKVGS 252
Q+L E L Q F L+G NIDIFH+NPAHQR ++ +RL + + I+V
Sbjct: 269 TQMLKDNEQTLQQTLTKFNTNSLLGSNIDIFHQNPAHQRKML---DRLTGSYDTSIQVAG 325
Query: 253 LEFNLTCIAMRDTKGEYIGPALQWVDITEQRDGQRQVESLIQKAIKGDLHDRINTSGYNG 312
L+F L + + G G ++W D+TE+ + + L + N
Sbjct: 326 LDFTLIATPVFE-NGVRTGTVVEWQDVTEKLAKEAKERQL---------------AAENA 369
Query: 313 FMRELGDGINNLLNTLVEP-------LGQCITVMSRVAEGDLNTSMSE-EYQGEFGRLAS 364
+++ D +++ NT+V + + ++ M + A+ D+ + + G
Sbjct: 370 RIKQALDNVSS--NTMVADADLNIIYMNKAVSQMFKQAQNDIAKDLPNFDASNLMGVNID 427
Query: 365 AVNASIVNLRNMVDKIT--------VSSARVATASTEIADGNNDLSQRVEAQASNLEETA 416
+ + + RN++ +T V + I D N + V A E A
Sbjct: 428 NFHKNPSHQRNLLKTLTTTYTSQLKVGGRTFQVVANPIRDPNGESIGTVVEWADRTAEVA 487
Query: 417 ASMEEITATVRQNADNAKDANLLATDAAKKAARGGEVVGEAISAMGAINTASKKIADIIS 476
EI + + A + D +L K+ G + + + A + I D+++
Sbjct: 488 IE-HEIDSII--GAASKGDLSLRVGTQDKE----GFFLNLSNGLNRLVGIADQVIGDVVN 540
Query: 477 VIDEIAFQTNLLALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAGAAKEIKGLINDSVD 536
+ D +A LN ++ G+ G+++ A +A E+ IN S +
Sbjct: 541 MFDGLAKGD----LNRQIQGEYQGQ--------FGKLQADANATAAKLTEVLDGINQSAN 588
Query: 537 KVNEG-----------SRLVNESGSTLKEIVEAVVRVSDLIAQIAASSVEQSTGIDEINR 585
V G S+ E ++L+E ++ ++ + Q A ++ + E N
Sbjct: 589 TVTSGAEEIAQGNADLSQRTEEQAASLEETASSMEEMTATVTQSAQNATVANQLAQEANT 648
Query: 586 AIAAMDEMTQQNASLVEETSAASQSLKD 613
A ++ +Q + +E + +S+ + D
Sbjct: 649 KAAHGGKVVEQAVTAMEAINESSKRIAD 676