Pairwise Alignments
Query, 678 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 955 a.a., PAS domain S-box from Dechlorosoma suillum PS
Score = 418 bits (1074), Expect = e-121
Identities = 228/517 (44%), Positives = 337/517 (65%), Gaps = 5/517 (0%)
Query: 166 RLASAVEGMTTNLMMADKEGIIQYLNPALLQLLTHREPELAQAFPGFKAAELVGKNIDIF 225
R+ ++ + TN+M+AD + I Y+N A+ + E ++ + P F+AA L+G NID+F
Sbjct: 440 RIKIGLDNVATNVMVADDQHNIIYMNKAVEDMFRRVEDDIRRDLPDFRAATLLGSNIDVF 499
Query: 226 HKNPAHQRSIISNPERLPFTSMIKVGSLEFNLTCIAMRDTKGEYIGPALQWVDITEQRDG 285
HKNPAHQR ++S + + +G F+LT + + +G +G A++W+D T +
Sbjct: 500 HKNPAHQRGLLSRLSG-SHRATVHLGGRTFSLTVTPVVNERGIRLGSAVEWLDRTAEVAV 558
Query: 286 QRQVESLIQKAIKGDLHDRINTSGYNGFMRELGDGINNLLNTLVEPLGQCITVMSRVAEG 345
+ +V ++ A GD R+ G +GF R+L +GIN LL T + L +++ +++G
Sbjct: 559 EAEVADIVNGAANGDFTRRLVLEGKDGFFRQLSEGINRLLETSQKGLDDVARMLNAMSQG 618
Query: 346 DLNTSMSEEYQGEFGRLASAVNASIVNLRNMVDKITVSSARVATASTEIADGNNDLSQRV 405
DL + + +Y G FG+L + N+++ L+ +V++I ++ + TA+ EIA GN DLS R
Sbjct: 619 DLTSRIEADYAGTFGQLKNDANSTVEQLKEIVERIKGATEAINTAAQEIASGNTDLSSRT 678
Query: 406 EAQASNLEETAASMEEITATVRQNADNAKDANLLATDAAKKAARGGEVVGEAISAMGAIN 465
E QAS+LEETA+SME++T+TV+QNADNA+ AN LA+ A + A +GGEVV + + MGAI+
Sbjct: 679 EEQASSLEETASSMEQLTSTVKQNADNARTANELASGAQQVAVKGGEVVEQVVQTMGAIH 738
Query: 466 TASKKIADIISVIDEIAFQTNLLALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAGAAK 525
+S KIADII VID IAFQTN+LALNAAVEAARAGEQGRGFAVVA EVRNLAQRSA AAK
Sbjct: 739 HSSSKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAK 798
Query: 526 EIKGLINDSVDKVNEGSRLVNESGSTLKEIVEAVVRVSDLIAQIAASSVEQSTGIDEINR 585
EIK LI+DSV+KV GSRLV+ +G T++E+V ++ RV+ ++A IA +S EQS GI+++
Sbjct: 799 EIKALISDSVEKVENGSRLVDSAGRTMEEVVTSIKRVAKIMADIAEASREQSAGIEQVGL 858
Query: 586 AIAAMDEMTQQNASLVEETSAASQSLKDEGKELLNLMNFFVTENNVTTFER---KPRQST 642
A++ MDE+TQQNA+LVEE +AA++SL+++ L+ ++ F + P
Sbjct: 859 AVSQMDEVTQQNAALVEEAAAAAESLEEQAHGLMEAVSVFRLGHEAPAGRHAGPSPAMGQ 918
Query: 643 PPKTKPVVSMH-KAPINQAVHKMPARAAEEGDEWEEF 678
P + + P + K A DEWEEF
Sbjct: 919 AQAAIPHLQQEVRVPSPKFGGKPVNLPASLDDEWEEF 955
Score = 85.5 bits (210), Expect = 1e-20
Identities = 118/520 (22%), Positives = 195/520 (37%), Gaps = 95/520 (18%)
Query: 26 FDESETQS-GLSNYQLLSALNAAQTALMMIDRDFRITYFNNQTLKLLKQHETLFRSVWPD 84
FD +E Q N ++ L+ T +M+ D I Y N + ++ E R PD
Sbjct: 426 FDVAEAQRIANENLRIKIGLDNVATNVMVADDQHNIIYMNKAVEDMFRRVEDDIRRDLPD 485
Query: 85 FRAEADFLHGYCIDHFHLNPRHQRTMLADPSHLPYTTVINIKGVKIELIVGAIIDDRGSY 144
FRA L G ID FH NP HQR +L+ S TV ++ G L V ++++RG
Sbjct: 486 FRAAT--LLGSNIDVFHKNPAHQRGLLSRLSGSHRATV-HLGGRTFSLTVTPVVNERGIR 542
Query: 145 IGNTLEWRDVTEELLRDQQIGRLASAVEG--MTTNLMMADKEGIIQYLNPALLQLLTHRE 202
+G+ +EW D T E+ + ++ + + T L++ K+G + L+ + +LL
Sbjct: 543 LGSAVEWLDRTAEVAVEAEVADIVNGAANGDFTRRLVLEGKDGFFRQLSEGINRLL---- 598
Query: 203 PELAQAFPGFKAAELVGKNIDIFHKNPAHQRSIISNPERLPFTSMIKVGSLEFNLTCIAM 262
E K +D + A + +S + TS I
Sbjct: 599 -------------ETSQKGLD----DVARMLNAMSQGD---LTSRI-------------- 624
Query: 263 RDTKGEYIGPALQWVDITEQRDGQRQVESL--IQKAIKGDLHDRINTSGYNGFMRELGDG 320
+ +Y G Q + D VE L I + IKG T N +E+ G
Sbjct: 625 ---EADYAGTFGQL-----KNDANSTVEQLKEIVERIKG------ATEAINTAAQEIASG 670
Query: 321 INNLLNTLVEPLGQCITVMSRVAEGDLNTSMSEEYQGEFGRLASAVNASIVNLRNMVDKI 380
+L + E S + + + + LAS V +V+++
Sbjct: 671 NTDLSSRTEEQASSLEETASSMEQLTSTVKQNADNARTANELASGAQQVAVKGGEVVEQV 730
Query: 381 TVSSARVATASTEIAD----------GNNDLSQRVEAQASNLEETAASMEEITATVR--- 427
+ + +S++IAD N L+ +A+ E + VR
Sbjct: 731 VQTMGAIHHSSSKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLA 790
Query: 428 -QNADNAKDANLLATDAAKKAARGGEVVGEAISAMGAINTASKKIADI------------ 474
++A AK+ L +D+ +K G +V A M + T+ K++A I
Sbjct: 791 QRSAAAAKEIKALISDSVEKVENGSRLVDSAGRTMEEVVTSIKRVAKIMADIAEASREQS 850
Query: 475 ---------ISVIDEIAFQTNLLALNAAVEAARAGEQGRG 505
+S +DE+ Q L AA A EQ G
Sbjct: 851 AGIEQVGLAVSQMDEVTQQNAALVEEAAAAAESLEEQAHG 890