Pairwise Alignments
Query, 678 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 654 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1
Score = 471 bits (1213), Expect = e-137
Identities = 274/637 (43%), Positives = 390/637 (61%), Gaps = 11/637 (1%)
Query: 44 LNAAQTALMMIDRDFRITYFNNQTLKLLKQHETLFRSVWPDFRAEADFLHGYCIDHFHLN 103
L+ ++ M+ D D I Y N L +L + E R P F + G ID FH+N
Sbjct: 27 LDNSRNNFMIADSDRNIIYANKAVLNMLSEAEADIRKQLPQFSVAR--VIGSNIDIFHVN 84
Query: 104 PRHQRTMLADPSHLPYTTVINIKGVKIELIVGAIIDDRGSYIGNTLEWRDVTEELLRDQQ 163
P HQR ML + +T I+I +LI+ II ++G +EW D TE + ++
Sbjct: 85 PAHQRNMLERLTQ-SHTAQISIGKRIFKLILTPIISRDNKHLGTGVEWIDRTESIDAERA 143
Query: 164 IGRLASAVEGMTTNLMMADKEGIIQYLNPALLQLLTHREPELAQAFPGFKAAELVGKNID 223
R+ A+ +TN+M+AD I Y+N ++ +L E E+ Q P F +++G ++D
Sbjct: 144 TQRILEALNNTSTNVMIADANRTIIYMNRSVEAMLRRSESEIRQVLPHFSVDKILGSSMD 203
Query: 224 IFHKNPAHQRSIISNPERLPFTSMIKVGSLEFNLTCIAMRDTKGEYIGPALQWVDITEQR 283
IFH+NPAHQ S++ +R + S I+V S F LT + T GE +G ++W+D TE+
Sbjct: 204 IFHRNPAHQASLLDKLDR-KYESQIQVASCHFRLTASPIILTSGERLGSVVEWLDRTEEV 262
Query: 284 DGQRQVESLIQKAIKGDLHDRINTSGYNGFMRELGDGINNLLNTLVEPLGQCITVMSRVA 343
++++ ++ A GD R+++ G GF L + +N+L+ T L V+ +A
Sbjct: 263 QVEQEIARIVAAAAAGDFSQRVDSHGKQGFFLMLANSLNSLIETSDRGLQDVARVLMAMA 322
Query: 344 EGDLNTSMSEEYQGEFGRLASAVNASIVNLRNMVDKITVSSARVATASTEIADGNNDLSQ 403
EGDL T + EY+G F L + N + L M+ I ++ + TAS+EIA GN DLS
Sbjct: 323 EGDLTTRIYNEYEGTFNDLKNYSNQTAEKLSYMIRDIQKAADTINTASSEIAQGNADLSS 382
Query: 404 RVEAQASNLEETAASMEEITATVRQNADNAKDANLLATDAAKKAARGGEVVGEAISAMGA 463
R E QAS+LEET+ASMEE+T TV+ NADNA AN LA+ AA A GGE++ + + M +
Sbjct: 383 RTEEQASSLEETSASMEELTGTVKLNADNASQANALASKAADVAEDGGELIQQVVQTMAS 442
Query: 464 INTASKKIADIISVIDEIAFQTNLLALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAGA 523
IN +++KIADII VID IAFQTN+LALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA A
Sbjct: 443 INESARKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSANA 502
Query: 524 AKEIKGLINDSVDKVNEGSRLVNESGSTLKEIVEAVVRVSDLIAQIAASSVEQSTGIDEI 583
AK+IK LI+DSV K++ G+ LV +SG T+KEIV A+ RV+D++A+IA++S EQ+ GIDEI
Sbjct: 503 AKDIKALISDSVSKIDSGNNLVGKSGDTMKEIVIAIKRVNDIMAEIASASNEQAIGIDEI 562
Query: 584 NRAIAAMDEMTQQNASLVEETSAASQSLKDEGKELL-NLMNFFVTENNVTTFERKPRQST 642
+A+ MDEMTQQNA+LVEE +AA++S++ + ++L ++ NF V E R R +T
Sbjct: 563 GKAVVQMDEMTQQNAALVEEAAAAAESMQSQAQQLADSVANFKVDEET-----RSARHTT 617
Query: 643 PPKTKPVVSMHKAPINQAVHKM-PARAAEEGDEWEEF 678
K P A + M P + DEWEEF
Sbjct: 618 ELKKIPQKIPTLARVTPKPKAMTPKLNKADQDEWEEF 654
Score = 82.4 bits (202), Expect = 6e-20
Identities = 117/534 (21%), Positives = 205/534 (38%), Gaps = 66/534 (12%)
Query: 39 QLLSALNAAQTALMMIDRDFRITYFNNQTLKLLKQHETLFRSVWPDFRAEADFLHGYCID 98
++L ALN T +M+ D + I Y N +L++ E+ R V P F D + G +D
Sbjct: 146 RILEALNNTSTNVMIADANRTIIYMNRSVEAMLRRSESEIRQVLPHF--SVDKILGSSMD 203
Query: 99 HFHLNPRHQRTMLADPSHLPYTTVINIKGVKIELIVGAIIDDRGSYIGNTLEWRDVTEEL 158
FH NP HQ ++L D Y + I + L II G +G+ +EW D TEE+
Sbjct: 204 IFHRNPAHQASLL-DKLDRKYESQIQVASCHFRLTASPIILTSGERLGSVVEWLDRTEEV 262
Query: 159 LRDQQIGRL--ASAVEGMTTNLMMADKEGIIQYLNPALLQLLTHRE---PELAQAFPGFK 213
+Q+I R+ A+A + + K+G L +L L+ + ++A+
Sbjct: 263 QVEQEIARIVAAAAAGDFSQRVDSHGKQGFFLMLANSLNSLIETSDRGLQDVARVLMAMA 322
Query: 214 AAELVGKNIDIFHKNPAHQRSIISNPERLPFTSMIKVGSLEFNLTCIAMRDTKGEYIGPA 273
+L + I ++ + SN + MI+
Sbjct: 323 EGDLTTR-IYNEYEGTFNDLKNYSNQTAEKLSYMIR------------------------ 357
Query: 274 LQWVDITEQRDGQRQVESLIQKAIKGDLHDRINTSGYNGFMRELGDGINNLLNTLVEPLG 333
DI + D S I + DL R E + ++ E G
Sbjct: 358 ----DIQKAADTINTASSEIAQG-NADLSSR---------TEEQASSLEETSASMEELTG 403
Query: 334 QCITVMSRVAEGDLNTSMSEEYQGEFGRLASAVNASIVNLRNMVDKITVSSARVATASTE 393
++ + S + + + G L V ++ ++ KI A +
Sbjct: 404 TVKLNADNASQANALASKAADVAEDGGELIQQVVQTMASINESARKI----ADIIGVIDG 459
Query: 394 IADGNNDLSQRVEAQASNLEET----AASMEEITATVRQNADNAKDANLLATDAAKKAAR 449
IA N L+ +A+ E A E+ + +++A+ AKD L +D+ K
Sbjct: 460 IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSANAAKDIKALISDSVSKIDS 519
Query: 450 GGEVVGEAISAMGAINTASKKIADIISVIDEIAFQTNLLAL---NAAVEAARAGEQGRGF 506
G +VG++ M I A K++ DI++ EIA +N A+ + E +
Sbjct: 520 GNNLVGKSGDTMKEIVIAIKRVNDIMA---EIASASNEQAIGIDEIGKAVVQMDEMTQQN 576
Query: 507 AVVAGEVRNLAQRSAGAAKEI-KGLINDSVDKVNEGSRLVNESGSTLKEIVEAV 559
A + E A+ A+++ + N VD+ +R E LK+I + +
Sbjct: 577 AALVEEAAAAAESMQSQAQQLADSVANFKVDEETRSARHTTE----LKKIPQKI 626