Pairwise Alignments

Query, 233 a.a., chemoreceptor glutamine deamidase CheD from Vibrio cholerae E7946 ATCC 55056

Subject, 210 a.a., CheD, stimulates methylation of MCP proteins (RefSeq) from Shewanella loihica PV-4

 Score =  146 bits (369), Expect = 3e-40
 Identities = 84/192 (43%), Positives = 110/192 (57%), Gaps = 8/192 (4%)

Query: 45  DHRH---WVKVMPGGVYATSDQEIIHTGLGSCVSACAWDIEMKVGGMNHFLLPFNNQFES 101
           D RH     +V PG  Y T+  E+I T LGSCV+AC WD  + +GG+NHFLLP     E 
Sbjct: 22  DSRHDAVVARVDPGNFYVTAHDELIFTRLGSCVAACIWDPLLGIGGLNHFLLPERQLHED 81

Query: 102 QHWHPQALLSDSSRYGCYAMEVLINRLLSMGAERERLKFKLFGGAHLMGYQSL-VGEKNV 160
             WH   L S + RYG +AME LIN +LS+G  R RLK K+FGGA +     L VGE N+
Sbjct: 82  --WH--QLTSYTCRYGNWAMEQLINSILSLGGMRNRLKAKVFGGAQMTATSVLNVGESNI 137

Query: 161 EFVLEYAKREKLNVVAQDLGGAQPRKLLFDPQTGQAWVKRIGFSSAHAIKQDEELYQHSI 220
            FV  Y K E + +V++DLGG  PRK+LF P +G+  + R+       +  +E+ Y   I
Sbjct: 138 SFVKNYLKTEGIEIVSEDLGGPWPRKVLFHPNSGKVKLMRLSPERISKMMSEEQRYLKQI 197

Query: 221 DKQIPSDDVELF 232
                   VELF
Sbjct: 198 VTAQGESQVELF 209