Pairwise Alignments

Query, 233 a.a., chemoreceptor glutamine deamidase CheD from Vibrio cholerae E7946 ATCC 55056

Subject, 199 a.a., chemotaxis protein CheD, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  104 bits (260), Expect = 1e-27
 Identities = 64/194 (32%), Positives = 108/194 (55%), Gaps = 14/194 (7%)

Query: 45  DHRHWVKVMPGGVYATSDQEIIHTGLGSCVSACAWDIEMKVGGMNHFLLPFNNQFESQHW 104
           + R  V + PG  Y T+  E+I T LGSCV+ C +D + +V GMNHFLL  + + +  H+
Sbjct: 4   NQRTVVMIGPGEHYVTAKNEVIKTLLGSCVAVCLYDPKAQVIGMNHFLLAADRR-KFTHF 62

Query: 105 HPQALLSDSSRYGCYAMEVLINRLLSMGAERERLKFKLFGGAHLMGY-------QSLVGE 157
               L S +  YG +AME+LIN +L  GA+R+ L+ K+FGGA+++            +G 
Sbjct: 63  ----LDSRAGYYGVHAMEILINAMLKRGAQRKYLQSKIFGGANVLSLCADNILNHYDIGG 118

Query: 158 KNVEFVLEYAKREKLNVVAQDLGGAQPRKLLFDPQTGQAWVKRI--GFSSAHAIKQDEEL 215
            N++FV  + +RE++ ++++D+GG   R + FDP     +   I   +    +++ +E  
Sbjct: 119 MNIDFVRHFLQRERIPIISEDIGGHCGRVIYFDPTDYSVYRSLIEHKYEEIASLQDEEYR 178

Query: 216 YQHSIDKQIPSDDV 229
           Y +   + I S  V
Sbjct: 179 YFNQASEDIHSSGV 192