Pairwise Alignments

Query, 384 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score = 90.9 bits (224), Expect = 8e-23
 Identities = 62/189 (32%), Positives = 106/189 (56%), Gaps = 10/189 (5%)

Query: 159 DVSEKSISAVHSIHDMSQKLDMVFKLLNQVRSLSEQTNLLALNAAIEAARAGEAGRGFAV 218
           D+ +  + AV ++  + ++   V  +L  +RS++EQTNLLALNAAIEAARAGE GRGFAV
Sbjct: 348 DLGDSVMGAVKAMEQLEEETQEVGSVLTVIRSIAEQTNLLALNAAIEAARAGEQGRGFAV 407

Query: 219 VAQEVRNLSIQAANLNTQIETEMKVAQDTVDIANRTV---GEMASFDMTQAIESKEKVDY 275
           VA EVRNL+ + A    +I+  ++  Q++ +     +   GE +   + ++IE+ + ++ 
Sbjct: 408 VADEVRNLAQKTAASTAEIQQIIQRLQNSANTVLNVMTSNGEKSRASIQRSIEATQLLET 467

Query: 276 MLRGVQQLN------TEIEQEVNKLQRLGQQLTQQVREGTRA-LQFTDIVYQQGEYALGS 328
           + R V Q++       +  QE   L    QQ TQ +++  +A     +   + GE  + +
Sbjct: 468 IARTVNQIDELNAGIAQFTQEQIGLSSSIQQETQVLQQDAQATANGAEATARLGEQLVST 527

Query: 329 ITFLQEASG 337
              L+ A+G
Sbjct: 528 GDHLRAATG 536



 Score = 30.4 bits (67), Expect = 1e-04
 Identities = 41/212 (19%), Positives = 88/212 (41%), Gaps = 5/212 (2%)

Query: 162 EKSISAVHSIHDMSQKLDMVFKLLNQVRSLSEQTNLLALNAAIEAARAGEAGRGFAVVAQ 221
           E + S  H    +++ +  +   + +V   S+Q +  A +AA +AA A E     +    
Sbjct: 288 ENAKSQQHHTDSITRDILTMTGSIQEVAQRSQQASDEANSAARQAATAREHVGSLSTGIS 347

Query: 222 EVRNLSIQAANLNTQIETEMKVAQDTVDIANRTVGEMASFDMTQAIESKEKVDYMLRGVQ 281
           ++ +  + A     Q+E E +     + +  R++ E  +     A     +     RG  
Sbjct: 348 DLGDSVMGAVKAMEQLEEETQEVGSVLTVI-RSIAEQTNLLALNAAIEAARAGEQGRGFA 406

Query: 282 QLNTEIEQEVNKLQRLGQQLTQQV-REGTRALQFTDIVYQQGEYALGSITFLQEASGLLK 340
            +  E+     K      ++ Q + R    A    +++   GE +  SI    EA+ LL+
Sbjct: 407 VVADEVRNLAQKTAASTAEIQQIIQRLQNSANTVLNVMTSNGEKSRASIQRSIEATQLLE 466

Query: 341 AVQSNSRNVQQLIENIEALQERSRNRGGLAAN 372
            +   +R V Q+ E    + + ++ + GL+++
Sbjct: 467 TI---ARTVNQIDELNAGIAQFTQEQIGLSSS 495



 Score = 28.9 bits (63), Expect = 4e-04
 Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 71  ALSLLEQVLKENIQRVAEPLEKQRLIINSSAETLNNSFFGLQRVSEEQSS---VSTQLVD 127
           A+  +EQ L+E  Q V   L   R I   +     N+     R  E+      V+ ++ +
Sbjct: 356 AVKAMEQ-LEEETQEVGSVLTVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRN 414

Query: 128 NLMANQGSEFDLMQVLPKTEAIIQQFVQILVDVSEKSISAVHSIHDMSQKLDMVFKLLNQ 187
                  S  ++ Q++ + +      + ++    EKS +++    + +Q L+ + + +NQ
Sbjct: 415 LAQKTAASTAEIQQIIQRLQNSANTVLNVMTSNGEKSRASIQRSIEATQLLETIARTVNQ 474

Query: 188 VRSLS 192
           +  L+
Sbjct: 475 IDELN 479