Pairwise Alignments

Query, 384 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score = 86.7 bits (213), Expect = 2e-21
 Identities = 79/300 (26%), Positives = 141/300 (47%), Gaps = 35/300 (11%)

Query: 64  LSAEQQQALSLLEQVLKENIQRVAEPLEKQRLIINSSAETLNNSFFGLQRVSEEQSSVST 123
           +S+  QQ   +  +VL  +   +A   ++Q    NS A  +N      Q ++   +  S 
Sbjct: 354 VSSATQQVNEVAARVLAASNSSMANS-DEQASRTNSVAAAINELGAAAQEIARNAADASQ 412

Query: 124 QLVD-NLMANQGSEFDLMQVLPKTEAIIQQFVQILVDVSEKSISAVHSIHDMSQKLDMVF 182
           Q       A  G +            +++Q +  + ++S K  ++   I  ++ K   + 
Sbjct: 413 QASGARHQAEDGRQ------------VVEQNIAAMRELSAKISASCAQIEALNAKTVDIG 460

Query: 183 KLLNQVRSLSEQTNLLALNAAIEAARAGEAGRGFAVVAQEVRNLSIQAANLNTQIETEMK 242
           ++L  ++ +SEQTNLLALNAAIEAARAGEAGRGFAVVA EVRNL+ +  +   +I+  ++
Sbjct: 461 QILEVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQSSAQEIQQMIE 520

Query: 243 VAQDTVDIANRTVGEMASFDMTQAIESKEKVDYMLRGVQQLNTEIEQEVNKLQRLGQQLT 302
             Q     + +T+ E          +S+  V    R  ++L  E+ Q + ++  + Q + 
Sbjct: 521 QLQVGAGASVQTMTESQR-------QSESSVSIADRAGERLG-EVTQRIGEIDGMNQSVA 572

Query: 303 QQVREGTRALQ-----FTDI--VYQQGEYALGSITFLQEASGLLKAVQSNSRNVQQLIEN 355
               E T  ++      T+I  + QQG      +  LQ        +   +R ++QL+++
Sbjct: 573 TATEEQTAVIESLNMDITEINTLNQQG------VENLQSTLRACGDLDQQARRLKQLVDS 626



 Score = 33.9 bits (76), Expect = 1e-05
 Identities = 38/191 (19%), Positives = 84/191 (43%), Gaps = 22/191 (11%)

Query: 178 LDMVFKLLNQVRSLSEQTNLLALNAAIEAARAGEAGRGFAVVAQEVRNLSIQAANLNTQI 237
           ++ +   + +V S ++Q N +A  A + AA    +    A   ++    +  AA +N   
Sbjct: 344 VERIHTSIREVSSATQQVNEVA--ARVLAA----SNSSMANSDEQASRTNSVAAAINELG 397

Query: 238 ETEMKVAQDTVDIANRTVGEMASFDMTQAIESKEKVDYMLRGVQQLNTEIEQEVNKLQRL 297
               ++A++  D +     + AS    QA + ++ V+  +  +++L+ +I     +++ L
Sbjct: 398 AAAQEIARNAADAS-----QQASGARHQAEDGRQVVEQNIAAMRELSAKISASCAQIEAL 452

Query: 298 -------GQ--QLTQQVREGTRALQFTDIVY--QQGEYALGSITFLQEASGLLKAVQSNS 346
                  GQ  ++ + + E T  L     +   + GE   G      E   L    QS++
Sbjct: 453 NAKTVDIGQILEVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQSSA 512

Query: 347 RNVQQLIENIE 357
           + +QQ+IE ++
Sbjct: 513 QEIQQMIEQLQ 523