Pairwise Alignments

Query, 384 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 83.2 bits (204), Expect = 2e-20
 Identities = 50/150 (33%), Positives = 87/150 (58%), Gaps = 9/150 (6%)

Query: 162 EKSISAVHSIHDMSQKLDMVFKLLNQVRSLSEQTNLLALNAAIEAARAGEAGRGFAVVAQ 221
           +++   +H + + SQ++  V   L+ +  ++EQTNLLALNAAIEAARAGE GRGFAVVA 
Sbjct: 336 QQAAEVIHQLENHSQEISRV---LDVIHGIAEQTNLLALNAAIEAARAGEQGRGFAVVAD 392

Query: 222 EVRNL----SIQAANLNTQIETEMKVAQDTVDIANRT--VGEMASFDMTQAIESKEKVDY 275
           EVR L    S+   ++   I +    A++ VD+  R+    E +     QA  S   ++ 
Sbjct: 393 EVRQLASRTSLATTDIQRMIGSLQTGAREAVDVMQRSREQAEHSVSHADQAEHSLSGINS 452

Query: 276 MLRGVQQLNTEIEQEVNKLQRLGQQLTQQV 305
            +  +  ++++I   V++   +G++++Q +
Sbjct: 453 RVNEISAMSSQIAAAVDQQSSVGEEISQSI 482



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 36/210 (17%), Positives = 81/210 (38%), Gaps = 20/210 (9%)

Query: 180 MVFKLLNQVRSLSEQTNLL--ALNAAIEAARAGEAGRGFAVVAQEVRNLSIQAANLNTQI 237
           MV ++ +  R LS+    L  A++ + ++A   +        A +  + S+Q   LN Q 
Sbjct: 243 MVGRIADSSRQLSDHARDLLGAMHGSTQSAARQQQETDLIATAIQQMSASVQEVALNAQR 302

Query: 238 ETEMKVAQDTVDIANRTVGEMASFDMTQAIESKEKVDYMLRGVQQLNTEIEQEVNKLQRL 297
             E+    D+     R V       +T+     ++   ++  ++  + EI + ++ +  +
Sbjct: 303 TAEVAARADSEAAKGREVVGRTGSSITRLAADIQQAAEVIHQLENHSQEISRVLDVIHGI 362

Query: 298 GQQLTQQVREGTRALQFTDIVYQQGEYALGSITFLQEASGLLKAVQSNSRNVQQLIENIE 357
            +Q          AL       + GE   G      E   L       + ++Q++I +++
Sbjct: 363 AEQ------TNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSLATTDIQRMIGSLQ 416

Query: 358 A-------LQERSRNRGGLAANQHSIDEGE 380
                   + +RSR +      +HS+   +
Sbjct: 417 TGAREAVDVMQRSREQA-----EHSVSHAD 441