Pairwise Alignments

Query, 384 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score = 82.8 bits (203), Expect = 3e-20
 Identities = 62/228 (27%), Positives = 119/228 (52%), Gaps = 17/228 (7%)

Query: 86  VAEPLEKQRLIINSSAETLNNSFFGLQRVSEEQSSVSTQLVDNLMANQGSEFDLMQVLPK 145
           +AE   +QR     + + ++ +F  +   S E +   +Q  D+  A+ G      Q   +
Sbjct: 392 MAEAAGRQR----EAVDMVSTAFHEMVATSNEVARSCSQAADS--ADNGQ-----QQARE 440

Query: 146 TEAIIQQFVQILVDVSEKSISAVHSIHDMSQKLDMVFKLLNQVRSLSEQTNLLALNAAIE 205
            +  I   V+ +  +SE+   +   +  + +    +  +LN +RS++EQTNLLALNAAIE
Sbjct: 441 GQRQIDDAVRSVDQLSEELTRSAKDMTQLEKDSAGIQSILNTIRSIAEQTNLLALNAAIE 500

Query: 206 AARAGEAGRGFAVVAQEVRNLSIQAANLNTQIETEM-KVAQDTVDIANR-----TVGEMA 259
           AARAGE GRGFAVVA EVR L+ + ++   +I++ +  +A+ T  +A +      V + +
Sbjct: 501 AARAGEQGRGFAVVADEVRALAKRTSDSTAEIDSLLGNLAKRTASVAQQMHASLDVSQQS 560

Query: 260 SFDMTQAIESKEKVDYMLRGVQQLNTEIEQEVNKLQRLGQQLTQQVRE 307
              + QA  S  ++   +  ++ +NT+I     +  ++ + + + + +
Sbjct: 561 VTKIGQARSSFGQIRESVDVIRDMNTQIATAAEEQHQVAEDINRHISQ 608