Pairwise Alignments

Query, 384 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score = 89.7 bits (221), Expect = 2e-22
 Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 15/200 (7%)

Query: 72  LSLLEQVLKENIQRVAEPLEKQRLIINSSAETLNNSFFGLQRVSE--EQSSVSTQLVDNL 129
           L+ L +V+K N   +++  E     +  S + +N  +  L  V+   E+ + S Q V N+
Sbjct: 195 LTELVKVVKANADTLSDTSESFEREMKQSLQQINRQYVSLDSVATAMEEMTASAQEVSNI 254

Query: 130 --MANQGSEFDLMQVLPKTEAIIQQFVQILVDVSEKS---ISAVHSIHDMSQKLDMVFKL 184
              A + +E D  QV    E+  Q+  + + D+ + S     A  S+  ++     + ++
Sbjct: 255 SRQATEKTEQDATQV----ESSFQRVQKAISDIEQLSGLIEQASSSVATLNVNTTQINEV 310

Query: 185 LNQVRSLSEQTNLLALNAAIEAARAGEAGRGFAVVAQEVRNLS--IQAANLNTQ--IETE 240
           +  + ++SEQTNLLALNAAIEAARAGE GRGFAVVA EVR L+   QAA +  Q  IE  
Sbjct: 311 ITTINAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQAATVEIQAMIEKL 370

Query: 241 MKVAQDTVDIANRTVGEMAS 260
              +++  +I  +TV +  S
Sbjct: 371 QGESRNIANITEKTVSQAQS 390



 Score = 37.7 bits (86), Expect = 7e-07
 Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 15/187 (8%)

Query: 190 SLSEQTNLLALNAAIEAARAGEAGRGFAVVAQEVRNLSIQAANLNTQIETEMKVAQDTVD 249
           +L+E   ++  NA   +  +    R      Q++    +   ++ T +E EM  +   V 
Sbjct: 194 TLTELVKVVKANADTLSDTSESFEREMKQSLQQINRQYVSLDSVATAME-EMTASAQEVS 252

Query: 250 IANRTVGEMASFDMTQAIESKEKVDYMLRGVQQLNTEIEQEVNKLQRLGQQLTQ------ 303
             +R   E    D TQ   S ++V   +  ++QL+  IEQ  + +  L    TQ      
Sbjct: 253 NISRQATEKTEQDATQVESSFQRVQKAISDIEQLSGLIEQASSSVATLNVNTTQINEVIT 312

Query: 304 ---QVREGTRALQFTDIV--YQQGEYALGSITFLQEASGLLKAVQSNSRNVQQLIENIEA 358
               + E T  L     +   + GE   G      E   L    Q+ +  +Q +IE    
Sbjct: 313 TINAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQAATVEIQAMIEK--- 369

Query: 359 LQERSRN 365
           LQ  SRN
Sbjct: 370 LQGESRN 376