Pairwise Alignments

Query, 384 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  129 bits (323), Expect = 2e-34
 Identities = 96/381 (25%), Positives = 185/381 (48%), Gaps = 14/381 (3%)

Query: 8   ITAILIGQILLLLVIFQFGQIWWLGLIAICIGLLPWLAGGAPQPSIVTA-QPTDDVRLSA 66
           + AI IG  + L+  +    +     +A+ I +L W      Q ++ T    T+ + L+ 
Sbjct: 7   VFAIAIGYFVGLITFWIVSPV-----LAVAI-MLFWQLFRQQQSTLATGTSQTEQLNLAD 60

Query: 67  EQQQALSLLEQVLKENIQRVAEPLEKQRLIINSSAETLNNSFFGLQRVSEEQSSVSTQLV 126
              Q    L Q     +      +    ++   +   L +SF GL R+  EQ+   + LV
Sbjct: 61  LGWQTHQHLYQEAITTVNECENNINNVLMVQGEAVNLLGDSFEGLGRLMTEQTGFISDLV 120

Query: 127 DNLMANQGSEFDLMQVLPK-TEAIIQQFVQILVDVSEKSISAVHSIHDMSQKLDMVFKLL 185
            +    +    + M++    T   +++F+Q  +++S  ++  +  ++ + + +    K L
Sbjct: 121 KSTDDAEIFHSEQMKLFANNTSQTLERFIQSTIEMSASTMELLEKVNLIYESMPQAMKAL 180

Query: 186 NQVRSLSEQTNLLALNAAIEAARAGEAGRGFAVVAQEVRNLSIQAANLNTQIETEMKVAQ 245
             +  +S QTNLLALNAAIEAARAGEAGRGFAVVA EVR LS ++   +  I+ +++  Q
Sbjct: 181 QDIDQISSQTNLLALNAAIEAARAGEAGRGFAVVADEVRALSNRSGGFSESIQKQLRSIQ 240

Query: 246 DTVDIANRTVGEMASFDMTQAIESKEKVDYMLRGVQQLNTEIEQEVNKLQRLGQQLTQQV 305
           + ++   +   ++A+ DM+  I++K+ +D  L+ +     +  + + ++     +L   +
Sbjct: 241 NQIEQLTQQASKVAAQDMSYIIDAKKDIDTALKQIILKAEKDSKVIARIDSSAHELETAI 300

Query: 306 REGTRALQFTDIVYQQGEYALGSITFLQEASGLLKAVQSNSRNV--QQLIENIEALQERS 363
            +  R LQF+DI  Q   +   S+  L+E+   + A+      +  +++ E I   +   
Sbjct: 301 SDTIRGLQFSDITSQSLSHTNQSLYHLKESLKQVIAMSHEEFGIAGEKVTERIGLHRNEK 360

Query: 364 RNRGGLAANQHSIDEGEVELF 384
            N      +++ I  GE+ELF
Sbjct: 361 HN----PVSRNEITSGEIELF 377