Pairwise Alignments

Query, 384 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 86.3 bits (212), Expect = 2e-21
 Identities = 71/213 (33%), Positives = 113/213 (53%), Gaps = 36/213 (16%)

Query: 63  RLSAEQQQALSLLEQVLKENIQRVAEPLEKQRLIINSSAETLNNSFFGLQRVSEEQSSVS 122
           R +A+Q QAL++ +   ++++  +A  +E+    +   A             + EQS   
Sbjct: 245 RNTAQQGQALAVNQ---RQHLDSLATAMEEMTAAVKEVAR------------NAEQSCAE 289

Query: 123 TQLVDNLMANQGSEFDLMQVLPKTEAIIQQFVQILVDVSEKSISAVHSIHDMSQKLDMVF 182
           TQ   N   N GS+          E  +   + +L D    + +AV++++D + K+D V 
Sbjct: 290 TQEA-NQQVNAGSK--------DIETTVSA-IDVLSDEISAASNAVNTLNDKASKIDEVV 339

Query: 183 KLLNQVRSLSEQTNLLALNAAIEAARAGEAGRGFAVVAQEVRNLS--IQAANLNTQIETE 240
             +N   ++S+QTNLLALNAAIEAARAGE GRGFAVVA EVR L+   QAA +      E
Sbjct: 340 STIN---AISQQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQAATV------E 390

Query: 241 MKVAQDTVDIANRTVGEMASFDMTQAIESKEKV 273
           +K   +++    R + ++ S  ++QA E K+ V
Sbjct: 391 IKSMIESLQQGTRNLTQVMSRTVSQASEGKQHV 423



 Score = 24.3 bits (51), Expect = 0.008
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 70  QALSLLEQVLKENIQRVAEPLEKQRLIINSSAETLNNSFFGLQRVSEEQSSVSTQLVDNL 129
           Q +S       E  Q V +  +  + I + S+     S   +   +EEQS+V+ ++  NL
Sbjct: 407 QVMSRTVSQASEGKQHVLKTGKDLQSIAHHSSRVFEMSVL-IATSAEEQSAVANEIATNL 465

Query: 130 MANQGSEFDLMQ 141
           M  +    D+ Q
Sbjct: 466 MEIRNQSHDVEQ 477