Pairwise Alignments

Query, 384 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score = 95.9 bits (237), Expect = 2e-24
 Identities = 76/272 (27%), Positives = 135/272 (49%), Gaps = 20/272 (7%)

Query: 83  IQRVAEPLEKQRLIINSSAETLNNSFFGLQRVSEEQSSVSTQLVDNLM----ANQGSEFD 138
           ++  A  +  Q  +++S   + NN    +     E SS ++++  N      A Q +  D
Sbjct: 286 VKSAANAIHDQTKVMSSQLLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAATGD 345

Query: 139 LMQVLPKTEAIIQQFVQILVDVSEKSISAVHSIHDMSQKLDMVFKLLNQVRSLSEQTNLL 198
           +       +A +++   ++  ++  +  ++ S+ + SQK++ V   L+ +  ++EQTNLL
Sbjct: 346 VANAQRCVDASLEEIAGLMSQINNAA-GSIKSLSEQSQKINSV---LSVIGGIAEQTNLL 401

Query: 199 ALNAAIEAARAGEAGRGFAVVAQEVRNLSIQAANLNTQIETEMKVAQDTVDIANRTVGE- 257
           ALNAAIEAARAGE GRGFAVVA EVRNL+ +      +I   +      V +A +T+ E 
Sbjct: 402 ALNAAIEAARAGEQGRGFAVVADEVRNLASRTQASTLEINEMLSELHKLVSVAVKTMDES 461

Query: 258 ----MASFDMTQAI-ESKEKVDYMLRGVQQLNTEIEQEVNKLQRLGQQLTQQVREGTRAL 312
               + S D ++AI ES   V   +  +  ++T+I     +       +T+++     A+
Sbjct: 462 QQSCVRSVDSSRAISESLGSVTSAVTAINDMSTQIATAATE----QSSVTEEINRNVYAI 517

Query: 313 Q--FTDIVYQQGEYALGSITFLQEASGLLKAV 342
           Q    ++++   + A  S T  QE   L K V
Sbjct: 518 QEIVNELLHSSEDAAKVSQTVSQEGINLGKLV 549



 Score = 26.9 bits (58), Expect = 0.001
 Identities = 32/201 (15%), Positives = 77/201 (38%), Gaps = 40/201 (19%)

Query: 180 MVFKLLNQVRSLSE-------QTNLLALNAAIEAARAGEAGRGFAVVAQEVRNLSIQAAN 232
           MV  + N   SL++        T  L++    E A+ G+A   F +   +++ +    AN
Sbjct: 225 MVVPIKNMADSLNDIAKGEGDLTKRLSVKGEDEIAQLGQA---FNLFVDKLQTIIGDVAN 281

Query: 233 LNTQIETEMKVAQDTVDIANRTVGEMASFDMTQAIESKEKVDYMLRGVQQLNT---EIEQ 289
              ++++      D   + +           +Q +    + D ++  + ++++   E+ Q
Sbjct: 282 ATAKVKSAANAIHDQTKVMS-----------SQLLSHNNETDQVVTAITEMSSTASEVAQ 330

Query: 290 EVNKLQRLGQQLTQQVREGTRALQFTDIVYQQGEYALGSITFLQEASGLLKAVQSNSRNV 349
              ++    Q  T  V    R +  +                L+E +GL+  + + + ++
Sbjct: 331 NTTQVAEATQAATGDVANAQRCVDAS----------------LEEIAGLMSQINNAAGSI 374

Query: 350 QQLIENIEALQERSRNRGGLA 370
           + L E  + +       GG+A
Sbjct: 375 KSLSEQSQKINSVLSVIGGIA 395