Pairwise Alignments

Query, 568 a.a., two-component system sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 568 a.a., Serine phosphatase RsbU, regulator of sigma subunit from Pseudomonas fluorescens FW300-N2E2

 Score =  283 bits (725), Expect = 1e-80
 Identities = 171/555 (30%), Positives = 288/555 (51%), Gaps = 13/555 (2%)

Query: 1   MRVMIVDDHGTNRELCRFILAHIASHIDTFEDGQQAIDAMREMEILPDVILLDVMMPIKD 60
           + V+I +D   +R L   I+     H+ T  DG +A+D   E    P ++L+D MMP+ D
Sbjct: 8   LTVLIAEDSAADRLLLSTIVRRQGHHVLTAADGAEAVDVYLEKR--PHLVLMDAMMPVMD 65

Query: 61  GFVTAKEIRQAFVKHHIPIIFLTVLDDRDSFEKCL-ALGDDFILKPVERSVLIAKVQAHY 119
           GF  A++I+Q      +PIIFLT L + ++  +CL A GDDF+ KP  + +L AK++A  
Sbjct: 66  GFEAAQKIKQLAGDQLVPIIFLTSLTESEALARCLEAGGDDFLAKPYNQVILAAKIKAMD 125

Query: 120 RIVKMHNEVMEQRDELRHFREQVQYDYAISESIFTNLMEEMCHQVEHIFGIHYISTPSTI 179
           R+ ++   V+EQRD++    + +  +  +++++F  +    C    +I    Y+ +P  +
Sbjct: 126 RLRRLQATVVEQRDQIARHHDYLLNEQRVAKAVFDKIAHSGCLSAPNI---RYLQSPYAL 182

Query: 180 FNGDLIVVANRPHGGVYVMIADATGHGLPAAISTIPATRTFFSTAQKGLSLGEMVIELNH 239
           FNGDL++ A  P G ++V++ D TGHGLPAA+  +P    F+    KG  L +++ E+N 
Sbjct: 183 FNGDLLLAAFNPAGDMHVLLGDFTGHGLPAAVGAMPLAEVFYGMTAKGYGLAQILREMNA 242

Query: 240 SLERFLPVGMMLAASVFEVRANGFEISWWGGGLPEAYLLDHHGNIVSRLISNHMPLGVLP 299
            L+R LPV M   A++  +      +  W GG+P+ YL D    + + L + H+PLGVL 
Sbjct: 243 KLKRILPVDMFCCATLLCLSFQRCTVEIWNGGMPDGYLHDSLSGVRTPLPARHLPLGVLT 302

Query: 300 SNEFEADVQHFKLEPNQKLVCYTDGIIEAMNEQGEYFGQERLEHVL-TKAYSEALIPTLY 358
              F+   +   +    ++   +DG+I+  +E  + FG ERL+ V       + L   + 
Sbjct: 303 PQLFDDRTEVHTMSLGDRVFLLSDGVIDTTDEDEQLFGVERLQQVFAANREPDLLFEDIQ 362

Query: 359 DAVKKFSNRGKGDDLSILTMTFPITNSNSSDKALPKVVLSCIPL--QTELHFPADVLRKI 416
            A++ F    + DD S++ +        +    +        PL       F A  L++ 
Sbjct: 363 QALRDFRGESR-DDFSMVELRLVAPTQLNPPPPVYSDSGQSSPLDWSVSFEFRAQTLKRF 421

Query: 417 SLMNEVRRFLTGIVSGGEDLDLLCSVLSELFANAIEHGLLELDSSLKETPDGFFEFYQLR 476
           + M  + + L  +         L SV+SEL++NA++HG+L LDSSLK    GF  +Y+ R
Sbjct: 422 NPMPYLLQLLLEVHGLRVQSGALYSVMSELYSNALDHGVLGLDSSLKRDAVGFARYYRER 481

Query: 477 DKRLKTLPE-YHWLILKVNYQPDKQRIEIDLEHSGKGFDCQAL--KDASNQKSYGRGILL 533
           + RL  L + Y  + L V+   D  R+ I++E SG+GFD   +  +     +  GRG+ L
Sbjct: 482 NMRLDELSDGYVRVHLHVSPSGDGGRLAIEVEDSGEGFDVARVLARPVDTDRLSGRGVSL 541

Query: 534 ATQLCESLEYSNQGR 548
             QL     +S+ GR
Sbjct: 542 VRQLSHQASWSDDGR 556