Pairwise Alignments

Query, 568 a.a., two-component system sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 563 a.a., Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain from Pseudomonas stutzeri RCH2

 Score =  294 bits (752), Expect = 7e-84
 Identities = 180/566 (31%), Positives = 304/566 (53%), Gaps = 25/566 (4%)

Query: 1   MRVMIVDDHGTNRELCRFILAHIASHIDTFEDGQQAIDAMREMEILPDVILLDVMMPIKD 60
           + ++I +D   +R L   I+      + T  DGQ+A++  ++    P ++L+D +MP+ D
Sbjct: 5   LSILIAEDSPVDRMLLSTIVTRQGHRVLTAADGQEAVELFQQER--PQLVLMDALMPVMD 62

Query: 61  GFVTAKEIRQAFVKHHIPIIFLTVLDDRDSFEKCL-ALGDDFILKPVERSVLIAKVQAHY 119
           GF  A+ I+Q      +PIIFLT L + ++  +CL A GDDFI KP    +L AK+QA +
Sbjct: 63  GFEAARRIKQLAGDELVPIIFLTSLTENEALVQCLEAGGDDFIAKPYNPIILEAKIQAMH 122

Query: 120 RIVKMHNEVMEQRDELRHFREQVQYDYAISESIFTNLMEEMCHQVEHIFGIHYISTPSTI 179
           R+ ++   V+EQRD +    +Q+  ++  +++IF  +    C    +I    Y  +P  +
Sbjct: 123 RLRRLQATVLEQRDLIARRNQQLLAEHRAAKAIFDKVAHAGCLSAPNI---RYRQSPQAL 179

Query: 180 FNGDLIVVANRPHGGVYVMIADATGHGLPAAISTIPATRTFFSTAQKGLSLGEMVIELNH 239
           FNGDL++ A  P G ++V++ D TGHGLPAAI  +P   TF+  A KG S  +++ E+N 
Sbjct: 180 FNGDLLLAAQAPAGQMFVLLGDFTGHGLPAAIGAMPLAETFYGMAAKGYSGADILREMNA 239

Query: 240 SLERFLPVGMMLAASVFEVRANGFEISWWGGGLPEAYLLDHHGNIVSRLISNHMPLGVLP 299
            L++ LPV M   A + ++      +  W GGLP+ YL+  +G   + L+S H+PLGV+ 
Sbjct: 240 KLKQILPVEMFCCAMLLDINPKQGSLRVWNGGLPDGYLIGANGQRTA-LVSRHLPLGVVS 298

Query: 300 SNEFEADVQHFKLEPNQKLVCYTDGIIEAMNEQGEYFGQERLEHVLTKAYSEA-LIPTLY 358
           +   +   +H+ L P  +L+  +DG++E+ N   E FG++RL   LT     A L   + 
Sbjct: 299 AAALDDKFEHYPLAPGDRLLLLSDGVVESRNADDELFGEQRLLAALTANRDPAQLFDEIE 358

Query: 359 DAVKKFSNRGKGDDLSIL-------TMTFPITNSNSSDKALPKVVLSCIPLQTELHFPAD 411
            A+  F  + + DDLS++        M  P+    ++ ++ P      +     L   A+
Sbjct: 359 QALLDFHGQ-QHDDLSLVEVVVTDEAMAMPLVAPATAHRSRP------MDWSVRLELRAE 411

Query: 412 VLRKISLMNEVRRFLTGIVSGGEDLDLLCSVLSELFANAIEHGLLELDSSLKETPDGFFE 471
            LR  + +  + + L  +         + +VL EL++NA+EHG+L LDS+LK   +GF  
Sbjct: 412 SLRSGNPLPMLLQLLLQVNQLRPRAGAIYAVLGELYSNALEHGVLGLDSALKRDAEGFQR 471

Query: 472 FYQLRDKRLKTLPE-YHWLILKVNYQPDKQRIEIDLEHSGKGFD-CQALK-DASNQKSYG 528
           +Y LR +RL+ L E Y  L L +       R+ I +  SG GFD  +AL+    + +  G
Sbjct: 472 YYDLRQQRLQALAEGYVHLELAIRTDSQGGRLRISIGDSGAGFDVTRALQVQLGSGRFSG 531

Query: 529 RGILLATQLCESLEYSNQGRRVTAVY 554
           RG+ L  QL +  ++ + GR ++  +
Sbjct: 532 RGLHLVRQLSDGFDWQSDGRGLSVEF 557