Pairwise Alignments

Query, 568 a.a., two-component system sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1279 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score = 73.9 bits (180), Expect = 4e-17
 Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 3/116 (2%)

Query: 1    MRVMIVDDHGTNRELCRFILAHIASHIDTFEDGQQAIDAMREMEILPDVILLDVMMPIKD 60
            +RV++V+D+  N+E+    LA     +D  +DG  A++ +R+     DVIL+D+ MP+ D
Sbjct: 929  LRVLLVEDNQLNQEVASEFLAGANMVVDVADDGASALEKVRQQRY--DVILMDMQMPVMD 986

Query: 61   GFVTAKEIRQAFVKHHIPIIFLTVLDDRDSFEKCLALG-DDFILKPVERSVLIAKV 115
            G    +EIR+ F    +PI+ +T        E+CLA G +D I KPV+   L+ K+
Sbjct: 987  GIAATREIRRQFPAAVLPILAMTANAMEQDRERCLAAGMNDHIAKPVDPRDLLGKL 1042



 Score = 43.9 bits (102), Expect = 4e-08
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 9/122 (7%)

Query: 2   RVMIVDDHGTNRELCRFILAHIASHIDTFEDGQQAIDAMREMEILP---DVILLDVMMPI 58
           R+++VDDH   R++   +L  ++  +   + G + +  ++         D++ LD  MP 
Sbjct: 781 RLLVVDDHDHARDVVCDMLRSMSFQVSDTDSGNRCLAELQRASAAGEPYDIVFLDWQMPE 840

Query: 59  KDGFVTAKEIRQAFVKHHIPIIFLTVLDDRDSF-----EKCLALGDDFILKPVERSVLIA 113
            DG  TA+EIR+  +    P++ +     RD       E  L   ++ ++KPV  S L  
Sbjct: 841 MDGLATAREIRRLELPQP-PLVLMITAYGRDELARSAGESGLQGIEEILIKPVSPSQLFN 899

Query: 114 KV 115
            V
Sbjct: 900 TV 901