Pairwise Alignments

Query, 568 a.a., two-component system sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 565 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  177 bits (450), Expect = 8e-49
 Identities = 141/514 (27%), Positives = 235/514 (45%), Gaps = 24/514 (4%)

Query: 48  DVILLDVMMPIKDGFVTAKEIRQAFVKHHIPIIFLTVLDDRDSFEKCLALGD-DFILKPV 106
           D+IL++   P  DG           +   IP++ +    +  +F  C  +G  DFI+KP+
Sbjct: 54  DLILVNYFQP--DGTALTLLAHLDSLSKEIPVVVINDKKEPQAFLDCFKMGVLDFIVKPI 111

Query: 107 ERSVLIAKVQAHYRIVKMHNEVMEQRDELRHFREQVQYDYAISESIFTNLMEEMCHQVEH 166
              V   K +     +K+  +V +Q  EL    E++ Y+ A  E +  ++ E + +   +
Sbjct: 112 NVEVFWYKAEILLTRIKLQRKVKQQSIEL----EKMLYEKAREEKLARHIFEHLVNIDNN 167

Query: 167 IFG-IHYISTPSTIFNGDLIVVANRPHGGVYVMIADATGHGLPAAISTIPATRTFFSTAQ 225
            F  I      S  F+GD+++    P+G +++M+AD+TGHGL AA+  +  T TF +   
Sbjct: 168 QFDFIKSFCQASANFSGDILLNGVSPNGNLFIMLADSTGHGLSAAMPIMLLTSTFRAMVS 227

Query: 226 KGLSLGEMVIELNHSLERFLPVGMMLAASVFEVRANGFEISWWGGGLPEAYL-------- 277
           KG SL  ++ ELN  +    P    +A  + E      ++  W GG+P  YL        
Sbjct: 228 KGFSLVSLIYELNGKVFDEFPEDRFVACILLEADLFRNKLYVWNGGMPPVYLRLGHDEQH 287

Query: 278 LDHHGNIVSRLISNHMPLGVLPSNEFEADVQHFKLEPNQKLVC-YTDGIIEAMNEQGEYF 336
            D   +I     S +M LG+LP N F AD+    L P++   C ++DG+IE     G  F
Sbjct: 288 SDERASINKAFKSTNMALGILPPNTFVADIFSIDL-PSEGYACLFSDGLIEQPALDGSPF 346

Query: 337 GQERLEHVLTKAYSEALIPTLYDA--VKKFSNRGKGDDLSILTMTFPITNSNSSDKALPK 394
           G  RL  +  +      +P   D    K F      DD++I T+ F   +     +    
Sbjct: 347 GMVRLNALFNENLD--ALPVFLDEHFSKYFYGDNIADDITICTLDFKRLHQWHQARDFNH 404

Query: 395 VVLSCI-PLQTELHFPADVLRKISLMNEVRRFLTGIVSGGEDLDLLCSVLSELFANAIEH 453
           +V +       ++     +L     +  + +FL+           + +V++ELF NAI+H
Sbjct: 405 LVSNLNGEFNWDVKISGSMLLDADYLGTLNQFLSVFGFATNFCQRVFTVVAELFNNAIDH 464

Query: 454 GLLELDSSLKETPDGFFEFYQLRDKRLKTLPEYHWLILKVNYQPDKQRIEIDLEHSGKGF 513
           G+LELDS LK  P+GF  ++ +RD   + L    W+ + + +      + I +  SGKGF
Sbjct: 465 GVLELDSRLKNDPEGFELYHSIRDSYAERLSSDDWVKVCITWN-HMNELVITVADSGKGF 523

Query: 514 DCQALKDASNQKSYGRGILLATQLCESLEYSNQG 547
                  +S  +  GRGI L   LC+  E  + G
Sbjct: 524 VGFDKSISSYPELSGRGISLVKTLCKHYELISPG 557